Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 5.9e-186 654.1 330 100.0
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 5.9e-186 654.1 330 100.0
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 3.8e-185 651.4 330 99.4
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 3.5e-178 628.2 330 95.5
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.1e-176 623.2 330 94.5
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 1.5e-176 622.9 330 94.5
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 9.4e-176 620.2 331 94.0
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 1.6e-175 619.4 330 93.3
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 6.1e-175 617.5 331 93.7
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 6.1e-175 617.5 330 93.3
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 3.0e-174 615.1 330 93.0
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 5.3e-171 604.4 333 90.7
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 3.8e-169 598.2 333 89.2
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 8.5e-169 597.0 333 89.2
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 4.0e-166 588.2 333 88.0
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 6.8e-166 587.4 333 87.1
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.0e-161 573.5 330 84.8
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.2e-157 560.1 333 82.9
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 4.0e-142 508.4 331 75.2
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 6.4e-140 501.1 364 70.6
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.4e-139 499.2 365 70.4
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.0e-137 493.8 325 74.5
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 2.3e-137 492.7 330 73.3
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.9e-136 489.6 328 73.2
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 2.1e-135 486.1 332 71.4
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 3.1e-134 482.3 330 72.7
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 8.9e-134 480.7 330 72.4
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 9.9e-133 477.2 323 72.8
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.7e-132 476.5 330 70.9
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 6.4e-132 474.6 330 70.6
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 4.1e-131 471.9 330 70.6
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.2e-130 470.3 331 68.0
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.0e-129 467.2 324 71.6
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 1.3e-129 466.8 330 71.2
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.7e-129 466.5 331 70.1
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 3.0e-129 465.7 324 70.4
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.9e-129 465.3 331 70.4
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 1.1e-128 463.8 331 70.1
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 1.9e-128 463.0 331 70.4
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.5e-128 462.6 324 71.3
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.3e-128 462.2 331 69.5
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.3e-128 462.2 330 66.4
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 4.3e-128 461.8 330 68.2
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 7.3e-128 461.1 324 71.0
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.1e-126 457.2 331 69.2
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 2.4e-126 456.1 330 65.5
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 2.0e-125 453.0 298 74.5
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 3.4e-125 452.2 331 65.6
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 4.4e-125 451.8 324 68.5
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 9.9e-125 450.7 346 64.7
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.9e-124 449.1 330 66.1
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 2.9e-124 449.1 330 65.2
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 6.4e-124 448.0 330 64.8
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 2.4e-123 446.0 320 68.8
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 2.4e-123 446.0 332 67.2
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 2.4e-123 446.0 323 66.3
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.1e-123 444.5 330 65.5
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 3.0e-121 439.1 332 64.5
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 5.1e-121 438.3 332 64.2
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 6.6e-121 438.0 332 65.1
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 8.7e-121 437.6 323 65.6
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.1e-120 437.2 323 65.9
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 1.1e-120 437.2 323 66.6
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 2.5e-120 436.0 333 67.0
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 2.5e-120 436.0 326 64.7
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.3e-119 433.7 320 65.9
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 4.8e-119 431.8 320 65.6
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 2.4e-118 429.5 327 65.7
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 2.4e-118 429.5 336 66.7
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 4.0e-118 428.7 323 65.6
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 4.0e-118 428.7 322 63.4
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 1.2e-117 427.2 320 65.3
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 4.4e-117 425.2 377 57.8
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 2.2e-116 422.9 329 63.8
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 4.9e-116 421.8 314 67.8
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 1.4e-115 420.2 368 57.1
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.9e-115 419.9 383 57.4
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 4.2e-115 418.7 322 65.5
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 7.1e-115 417.9 352 63.1
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.3e-113 413.7 342 63.2
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.7e-113 413.3 292 69.5
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 5.1e-113 411.8 342 62.9
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 8.7e-113 411.0 330 63.3
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 9.6e-112 407.5 330 62.4
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 4.8e-111 405.2 321 62.9
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 4.8e-111 405.2 332 60.8
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 8.1e-111 404.4 323 62.8
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 3.2e-107 392.5 330 59.1
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 2.1e-103 379.8 323 62.8
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 6.2e-103 378.3 326 58.0
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 7.6e-101 371.3 295 64.4
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.9e-99 366.7 247 70.0
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 6.0e-98 361.7 223 77.6
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.0e-97 360.9 330 57.6
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 6.7e-97 358.2 323 57.3
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 5.7e-96 355.1 329 54.4
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 1.6e-95 353.6 327 56.6
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.4e-94 349.7 276 63.8
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 5.5e-91 338.6 330 55.5
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 5.5e-91 338.6 263 65.0
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 1.2e-90 337.4 255 65.9
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 2.7e-90 336.3 244 69.7
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 1.1e-88 330.9 294 55.8
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 9.7e-88 327.8 194 79.4
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 2.1e-82 310.1 331 49.8
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 1.8e-78 297.0 183 73.2
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.4e-78 296.6 210 65.7
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 9.1e-78 294.7 224 64.7
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 4.2e-75 285.8 330 47.0
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.6e-74 283.9 336 45.8
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 2.8e-71 273.1 331 45.9
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 4.8e-71 272.3 335 43.9
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 2.2e-68 263.5 165 71.5
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 1.1e-59 234.6 330 43.9
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.5e-59 234.2 170 68.8
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.4e-54 217.6 123 73.2
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.4e-54 216.9 151 63.6
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 7.0e-46 188.7 166 61.4
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.4e-40 169.9 120 74.2
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 4.4e-40 169.5 315 34.0
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 2.2e-39 167.2 197 53.8
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 5.4e-38 162.5 343 31.5
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 2.7e-37 160.2 358 30.7
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 1.5e-35 154.5 320 32.5
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.0e-33 148.3 144 56.2
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 5.8e-32 142.5 153 51.0
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 3.7e-31 139.8 354 30.2
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 4.7e-18 96.3 60 75.0
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 8.9e-17 92.0 71 64.8
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 7.6e-16 89.0 73 54.8
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 3.7e-15 86.7 242 26.4
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 8.6e-12 75.5 67 49.3
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 6.2e-10 69.3 65 55.4
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 6.8e-09 65.9 66 47.0
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 3.8e-07 60.1 58 53.4
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 8.4e-07 58.9 112 41.1


User provided reference genes

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