Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p71380 Brassica napus HOM05D000021 ORTHO05D015223 2.5e-77 292.0 139 100.0
BcaC01g01850 Brassica carinata HOM05D000021 ORTHO05D000010 4.0e-27 125.2 80 81.2
BcaB01g00947 Brassica carinata HOM05D000021 ORTHO05D000010 2.3e-22 109.4 54 96.3
Eucgr.E00436 Eucalyptus grandis HOM05D000021 ORTHO05D000010 5.4e-16 88.2 80 50.0
Aa31LG4G14500 Aethionema arabicum HOM05D000021 ORTHO05D000010 1.1e-13 80.5 80 50.0
CAN.G1909.7 Capsicum annuum HOM05D000021 ORTHO05D000010 1.1e-13 80.5 81 48.1
Oeu001613.1 Olea europaea HOM05D000021 ORTHO05D000010 5.6e-13 78.2 88 42.0
QL05p040370 Quercus lobata HOM05D000021 ORTHO05D000010 1.6e-12 76.6 71 43.7
C02p40490 Brassica napus HOM05D000021 ORTHO05D023969 2.1e-12 76.3 73 53.4
Nn2g11444 Nelumbo nucifera HOM05D000021 ORTHO05D000010 2.8e-12 75.9 89 40.4
Duzib150G1474 Durio zibethinus HOM05D000021 ORTHO05D000010 3.6e-12 75.5 73 42.5
Thecc.05G018800 Theobroma cacao HOM05D000021 ORTHO05D000010 8.1e-12 74.3 95 38.9
BolC3t13759H Brassica oleracea HOM05D000021 ORTHO05D000010 1.4e-11 73.6 107 43.0
Thhalv10010172m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 5.3e-11 71.6 61 57.4
Medtr6g065700 Medicago truncatula HOM05D000021 ORTHO05D000010 5.3e-11 71.6 79 43.0
FvH4_4g31390 Fragaria vesca HOM05D000021 ORTHO05D000010 4.4e-10 68.6 88 38.6
TAR473G0002 Trochodendron aralioides HOM05D000021 ORTHO05D000010 5.8e-10 68.2 82 40.2
Duzib093G0048 Durio zibethinus HOM05D000021 ORTHO05D000010 1.3e-09 67.0 73 45.2
Migut.G00815 Erythranthe guttata HOM05D000021 ORTHO05D000010 1.7e-09 66.6 95 36.8
Prupe.6G248200 Prunus persica HOM05D000021 ORTHO05D000010 1.7e-09 66.6 82 42.7
Sabra11G0082900 Salix brachista HOM05D000021 ORTHO05D000010 1.7e-09 66.6 81 38.3
PGR119G2151 Punica granatum HOM05D000021 ORTHO05D000010 2.2e-09 66.2 86 39.5
ECA247G2412 Erigeron canadensis HOM05D000021 ORTHO05D000010 6.4e-09 64.7 78 38.5
AL4G30950 Arabidopsis lyrata HOM05D000071 ORTHO05D000029 8.4e-09 64.3 110 35.5
Cpa.g.sc29.186 Carica papaya HOM05D020225 ORTHO05D011302 8.4e-09 64.3 85 35.3
MD04G1158600 Malus domestica HOM05D000021 ORTHO05D000010 1.1e-08 63.9 74 35.1
CARHR262980 Cardamine hirsuta HOM05D000021 ORTHO05D000010 1.9e-08 63.2 90 38.9
TWI59G0548 Tripterygium wilfordii HOM05D000029 ORTHO05D002500 1.9e-08 63.2 87 37.9
A08p02310 Brassica napus HOM05D000021 ORTHO05D000010 3.2e-08 62.4 50 62.0
Gohir.D04G172600 Gossypium hirsutum HOM05D000029 ORTHO05D002500 4.2e-08 62.0 87 39.1
Gorai.012G162000 Gossypium raimondii HOM05D000029 ORTHO05D002500 4.2e-08 62.0 87 39.1
Ciclev10013713m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.4e-08 61.6 89 30.3
Lj5P347T18 Lonicera japonica HOM05D000021 ORTHO05D000010 5.4e-08 61.6 77 40.3
Potri.016G127101 Populus trichocarpa HOM05D000053 ORTHO05D000035 7.1e-08 61.2 88 36.4
AT3G25010 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 9.3e-08 60.8 95 32.6
BcaB01g00946 Brassica carinata HOM05D000021 ORTHO05D000010 9.3e-08 60.8 70 45.7
Gorai.009G436300 Gossypium raimondii HOM05D000021 ORTHO05D000010 9.3e-08 60.8 69 42.0
THA.LOC104826803 Tarenaya hassleriana HOM05D000517 ORTHO05D003374 9.3e-08 60.8 101 35.6
Mapoly0647s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.2e-07 60.5 101 36.6
AT3G25020 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 1.6e-07 60.1 95 32.6
Nn2g13677 Nelumbo nucifera HOM05D000021 ORTHO05D000010 1.6e-07 60.1 43 58.1
Potri.001G064600 Populus trichocarpa HOM05D000311 ORTHO05D000183 1.6e-07 60.1 80 40.0
BcaB03g16479 Brassica carinata HOM05D000021 ORTHO05D000010 2.1e-07 59.7 57 50.9
QL05p085400 Quercus lobata HOM05D000311 ORTHO05D000183 2.1e-07 59.7 108 31.5
THA.LOC104813325 Tarenaya hassleriana HOM05D000071 ORTHO05D000029 2.1e-07 59.7 110 33.6
Thhalv10016209m.g Eutrema salsugineum HOM05D000071 ORTHO05D000029 2.7e-07 59.3 110 32.7
Potri.016G127000 Populus trichocarpa HOM05D000053 ORTHO05D000035 2.7e-07 59.3 88 36.4
CARHR227500 Cardamine hirsuta HOM05D000033 ORTHO05D001614 3.5e-07 58.9 93 31.2
MD05G1075900 Malus domestica HOM05D000021 ORTHO05D000010 3.5e-07 58.9 75 34.7
Peaxi162Scf00152g01341 Petunia axillaris HOM05D000311 ORTHO05D000183 3.5e-07 58.9 94 30.9
Sabra11G0077900 Salix brachista HOM05D000021 ORTHO05D000010 3.5e-07 58.9 62 43.5
Sabra11G0083000 Salix brachista HOM05D000021 ORTHO05D000010 3.5e-07 58.9 62 43.5
Sc12g0000740 Simmondsia chinensis HOM05D020225 ORTHO05D015223 3.5e-07 58.9 66 47.0
GSVIVG01017518001 Vitis vinifera HOM05D000021 ORTHO05D000010 3.5e-07 58.9 91 36.3
AL1G57200 Arabidopsis lyrata HOM05D001708 ORTHO05D001649 4.6e-07 58.5 106 35.8
Potri.018G124400 Populus trichocarpa HOM05D000311 ORTHO05D000183 4.6e-07 58.5 90 37.8
Prupe.4G063400 Prunus persica HOM05D000021 ORTHO05D000010 4.6e-07 58.5 96 33.3
Haze_19486 Corylus avellana HOM05D000021 ORTHO05D012344 6.0e-07 58.2 71 39.4
Duzib128G1050 Durio zibethinus HOM05D000021 ORTHO05D000010 6.0e-07 58.2 61 42.6
Duzib160G0341 Durio zibethinus HOM05D000021 ORTHO05D000010 6.0e-07 58.2 87 33.3
Gorai.009G435600 Gossypium raimondii HOM05D000021 ORTHO05D000010 6.0e-07 58.2 58 41.4
Atru.chr5.2144 Acer truncatum HOM05D000029 ORTHO05D002500 7.9e-07 57.8 95 32.6
AT3G24900 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 7.9e-07 57.8 95 31.6
BcaB03g16482 Brassica carinata HOM05D000021 ORTHO05D000010 7.9e-07 57.8 55 50.9
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 7.9e-07 57.8 63 39.7
Cc11_g02200 Coffea canephora HOM05D000021 ORTHO05D000010 7.9e-07 57.8 86 29.1
MBI04_g21137_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 7.9e-07 57.8 88 37.5
BcaC02g07894 Brassica carinata HOM05D000053 ORTHO05D000035 1.0e-06 57.4 94 34.0
Cc10_g10450 Coffea canephora HOM05D000021 ORTHO05D000010 1.0e-06 57.4 78 33.3
BcaB01g03968 Brassica carinata HOM05D000053 ORTHO05D000035 1.3e-06 57.0 103 35.9
BcaC01g01407 Brassica carinata HOM05D000021 ORTHO05D000010 1.3e-06 57.0 55 49.1
C03p91720 Brassica napus HOM05D000021 ORTHO05D000010 1.3e-06 57.0 55 49.1
BolC3t21491H Brassica oleracea HOM05D000021 ORTHO05D000010 1.3e-06 57.0 55 49.1
BolC8t52591H Brassica oleracea HOM05D000311 ORTHO05D000183 1.3e-06 57.0 104 28.8
BraA08t32197Z Brassica rapa HOM05D000021 ORTHO05D000010 1.3e-06 57.0 55 49.1
CSS0046746 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.3e-06 57.0 66 37.9
Carub.0003s2534 Capsella rubella HOM05D000053 ORTHO05D000035 1.3e-06 57.0 95 32.6
CiPaw.10G105000 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.3e-06 57.0 89 36.0
Eucgr.K00632 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.3e-06 57.0 91 30.8
Lalb_Chr13g0296281 Lupinus albus HOM05D000094 ORTHO05D001414 1.3e-06 57.0 99 34.3
Thecc.04G141000 Theobroma cacao HOM05D000053 ORTHO05D000035 1.3e-06 57.0 88 36.4
AT3G24982 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 1.7e-06 56.6 95 30.5
C09p64950 Brassica napus HOM05D000053 ORTHO05D000035 1.7e-06 56.6 102 28.4
BolC4t23193H Brassica oleracea HOM05D011050 ORTHO05D013523 1.7e-06 56.6 100 28.0
Ciclev10033466m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.7e-06 56.6 66 42.4
Duzib132G1037 Durio zibethinus HOM05D000029 ORTHO05D002500 1.7e-06 56.6 87 35.6
FAN25G0019 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.7e-06 56.6 79 34.2
Gohir.D04G148250 Gossypium hirsutum HOM05D000311 ORTHO05D000183 1.7e-06 56.6 87 36.8
Potri.001G065309 Populus trichocarpa HOM05D000311 ORTHO05D000183 1.7e-06 56.6 90 35.6
Hund20897 Selenicereus undatus HOM05D000021 ORTHO05D000010 1.7e-06 56.6 62 45.2
PGSC0003DMG400001831 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.7e-06 56.6 104 34.6
CAN.G572.27 Capsicum annuum HOM05D000053 ORTHO05D000035 2.3e-06 56.2 104 34.6
Eucgr.K00646 Eucalyptus grandis HOM05D000053 ORTHO05D000035 2.3e-06 56.2 92 31.5
Lsat_1_v5_gn_7_36640 Lactuca sativa HOM05D000021 ORTHO05D000010 2.3e-06 56.2 70 35.7
Medtr4g017350 Medicago truncatula HOM05D000053 ORTHO05D000448 2.3e-06 56.2 115 31.3
Potri.018G148000 Populus trichocarpa HOM05D000311 ORTHO05D000183 2.3e-06 56.2 77 40.3
Sopen11g010570 Solanum pennellii HOM05D000029 ORTHO05D006810 2.3e-06 56.2 92 34.8
PGSC0003DMG400001832 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.3e-06 56.2 101 34.7
vmacro09400 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.3e-06 56.2 63 44.4
BcaB04g18455 Brassica carinata HOM05D000053 ORTHO05D000035 3.0e-06 55.8 95 29.5
Haze_17211 Corylus avellana HOM05D000021 ORTHO05D000010 3.0e-06 55.8 76 32.9
Eucgr.B02264 Eucalyptus grandis HOM05D000021 ORTHO05D000010 3.0e-06 55.8 53 41.5
Ah.02g126560 Amaranthus hybridus HOM05D000349 ORTHO05D001395 3.9e-06 55.5 86 34.9
CSS0040798 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.9e-06 55.5 62 41.9
Lalb_Chr18g0060211 Lupinus albus HOM05D000029 ORTHO05D002500 3.9e-06 55.5 96 33.3
Psat0s3493g0240 Pisum sativum HOM05D000053 ORTHO05D000448 3.9e-06 55.5 115 32.2
GSVIVG01016648001 Vitis vinifera HOM05D000094 ORTHO05D000455 3.9e-06 55.5 102 34.3
Eucgr.C01316 Eucalyptus grandis HOM05D030671 ORTHO05D029338 5.1e-06 55.1 133 27.1
Thhalv10028397m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 5.1e-06 55.1 75 40.0
FAN22G2103 Fragaria x ananassa HOM05D000094 ORTHO05D003883 5.1e-06 55.1 80 37.5
HanXRQChr05g0131971 Helianthus annuus HOM05D000021 ORTHO05D000010 5.1e-06 55.1 85 35.3
Manes.02G140900 Manihot esculenta HOM05D000053 ORTHO05D000035 5.1e-06 55.1 91 31.9
Medtr4g017490 Medicago truncatula HOM05D000053 ORTHO05D000448 5.1e-06 55.1 91 33.0
Psat1g119400 Pisum sativum HOM05D000021 ORTHO05D000010 5.1e-06 55.1 69 37.7
Solyc06g033920.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 5.1e-06 55.1 104 32.7
BolC6t39866H Brassica oleracea HOM05D000311 ORTHO05D000183 6.6e-06 54.7 91 30.8
Carub.0003s0498 Capsella rubella HOM05D000053 ORTHO05D000035 6.6e-06 54.7 94 34.0
Cpa.g.sc7.85 Carica papaya HOM05D000094 ORTHO05D005974 6.6e-06 54.7 94 37.2
CiPaw.02G052500 Carya illinoinensis HOM05D000053 ORTHO05D000035 6.6e-06 54.7 100 30.0
Cc02_g20390 Coffea canephora HOM05D000029 ORTHO05D002500 6.6e-06 54.7 87 35.6
COL.COLO4_32621 Corchorus olitorius HOM05D001708 ORTHO05D001649 6.6e-06 54.7 86 34.9
Duzib106G0924 Durio zibethinus HOM05D000021 ORTHO05D000010 6.6e-06 54.7 85 29.4
FvH4_4g04300 Fragaria vesca HOM05D000094 ORTHO05D003883 6.6e-06 54.7 80 37.5
FAN09G4760 Fragaria x ananassa HOM05D000053 ORTHO05D000448 6.6e-06 54.7 103 32.0
HanXRQChr04g0119411 Helianthus annuus HOM05D021068 ORTHO05D017485 6.6e-06 54.7 77 33.8
HanXRQChr10g0315091 Helianthus annuus HOM05D000021 ORTHO05D000010 6.6e-06 54.7 63 39.7
Lj4A539T58 Lonicera japonica HOM05D012045 ORTHO05D012344 6.6e-06 54.7 82 35.4
MD10G1115100 Malus domestica HOM05D000029 ORTHO05D002500 6.6e-06 54.7 87 34.5
Potri.001G063909 Populus trichocarpa HOM05D000311 ORTHO05D000183 6.6e-06 54.7 81 37.0
QL02p099694 Quercus lobata HOM05D000053 ORTHO05D000035 6.6e-06 54.7 88 34.1
QL04p020337 Quercus lobata HOM05D000021 ORTHO05D000010 6.6e-06 54.7 46 45.7
QL09p046439 Quercus lobata HOM05D000053 ORTHO05D000035 6.6e-06 54.7 97 35.1
RcHm_v2.0_Chr2g0113631 Rosa chinensis HOM05D000021 ORTHO05D000010 6.6e-06 54.7 79 34.2
Solyc11g020280.2 Solanum lycopersicum HOM05D000029 ORTHO05D006810 6.6e-06 54.7 91 35.2
vmacro04617 Vaccinium macrocarpon HOM05D000029 ORTHO05D002500 6.6e-06 54.7 93 30.1
Zm00001eb247140 Zea mays HOM05D001708 ORTHO05D001649 6.6e-06 54.7 92 33.7
ATR0184G035 Amborella trichopoda HOM05D000311 ORTHO05D000183 8.7e-06 54.3 84 33.3
AagrBONN_evm.TU.Sc2ySwM_117.695 Anthoceros agrestis HOM05D000031 ORTHO05D001864 8.7e-06 54.3 75 36.0
AT3G19320 Arabidopsis thaliana HOM05D001708 ORTHO05D001649 8.7e-06 54.3 94 36.2
CiPaw.02G052600 Carya illinoinensis HOM05D000053 ORTHO05D000035 8.7e-06 54.3 100 33.0
Ciclev10000345m.g Citrus clementina HOM05D000021 ORTHO05D000010 8.7e-06 54.3 67 40.3
Ciclev10013677m.g Citrus clementina HOM05D000021 ORTHO05D017748 8.7e-06 54.3 92 30.4
Cc11_g02170 Coffea canephora HOM05D000021 ORTHO05D000010 8.7e-06 54.3 85 29.4
COL.COLO4_27016 Corchorus olitorius HOM05D000021 ORTHO05D000010 8.7e-06 54.3 85 29.4
Haze_18096 Corylus avellana HOM05D000021 ORTHO05D000010 8.7e-06 54.3 79 36.7
Gohir.A04G108700 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.7e-06 54.3 90 34.4
Medtr2g016200 Medicago truncatula HOM05D000311 ORTHO05D000183 8.7e-06 54.3 80 33.8
Potri.001G064900 Populus trichocarpa HOM05D000311 ORTHO05D000183 8.7e-06 54.3 76 40.8
Potri.018G144600 Populus trichocarpa HOM05D000311 ORTHO05D000183 8.7e-06 54.3 80 37.5
Potri.018G145512 Populus trichocarpa HOM05D000311 ORTHO05D000183 8.7e-06 54.3 55 45.5
QL08p006506 Quercus lobata HOM05D000053 ORTHO05D000035 8.7e-06 54.3 78 34.6
Sp1g36640 Schrenkiella parvula HOM05D001708 ORTHO05D001649 8.7e-06 54.3 106 33.0
Sopen06g014090 Solanum pennellii HOM05D000053 ORTHO05D000035 8.7e-06 54.3 101 33.7
GSVIVG01021636001 Vitis vinifera HOM05D000021 ORTHO05D000010 8.7e-06 54.3 87 35.6


User provided reference genes

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