Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 0.0e+00 1159.1 577 100.0
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 0.0e+00 1106.3 577 96.4
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 0.0e+00 1105.9 577 96.4
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 0.0e+00 1101.3 577 95.8
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.3e-302 1042.3 578 90.3
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.8e-294 1015.4 577 88.0
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.8e-294 1015.4 577 88.0
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.8e-294 1015.4 577 88.0
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 2.6e-290 1001.5 577 86.8
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.8e-289 997.7 577 86.3
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.4e-288 995.7 577 86.1
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.8e-286 988.8 577 85.3
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.8e-278 962.2 577 83.2
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 2.5e-272 941.8 577 80.8
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 5.4e-251 870.9 575 74.3
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 2.0e-250 869.0 576 75.2
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 5.0e-249 864.4 577 73.7
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.1e-248 863.2 574 74.7
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.9e-248 862.4 577 74.5
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.0e-246 855.1 577 73.1
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 6.8e-246 854.0 577 73.3
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.5e-245 852.8 577 73.0
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 2.0e-245 852.4 572 74.0
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 2.6e-245 852.0 577 72.8
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-244 849.7 577 73.0
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.7e-244 849.4 577 72.6
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.7e-244 849.4 577 73.0
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 2.2e-244 849.0 573 74.5
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 3.7e-244 848.2 574 72.6
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 8.3e-244 847.0 578 72.3
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 8.3e-244 847.0 577 72.3
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.8e-243 845.9 574 72.6
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 2.4e-243 845.5 574 73.2
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 3.1e-243 845.1 578 72.1
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 5.4e-243 844.3 574 72.8
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 7.0e-243 844.0 574 73.0
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.6e-242 842.8 574 72.6
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.0e-242 842.4 574 73.2
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 2.7e-242 842.0 573 72.6
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 2.7e-242 842.0 578 72.1
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 7.8e-242 840.5 571 72.5
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 1.3e-241 839.7 574 73.0
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.3e-241 839.0 582 71.5
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 2.3e-241 839.0 558 74.4
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 2.3e-241 839.0 574 71.6
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 8.6e-241 837.0 578 72.0
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 2.5e-240 835.5 574 72.3
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 2.5e-240 835.5 571 71.3
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 3.3e-240 835.1 577 70.9
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 4.3e-240 834.7 577 71.1
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 4.3e-240 834.7 574 71.8
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 4.3e-240 834.7 574 72.1
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 5.6e-240 834.3 577 70.7
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 2.8e-239 832.0 577 71.8
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.7e-239 831.2 594 70.0
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 6.1e-239 830.9 575 71.8
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 6.1e-239 830.9 574 71.8
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.8e-238 829.3 574 72.0
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.8e-238 829.3 578 71.1
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 2.3e-238 828.9 575 71.5
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 6.8e-238 827.4 577 70.5
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 8.9e-238 827.0 574 70.4
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 5.7e-237 824.3 577 70.7
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 5.7e-237 824.3 574 70.2
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 7.5e-237 823.9 592 69.3
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.7e-236 822.8 575 70.3
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 1.7e-236 822.8 577 70.7
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 3.7e-236 821.6 575 70.3
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 8.3e-236 820.5 577 69.8
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 8.3e-236 820.5 592 68.8
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.4e-235 819.7 577 70.2
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.8e-235 819.3 567 70.4
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 3.2e-235 818.5 574 71.6
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.1e-235 818.1 604 67.9
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 7.0e-235 817.4 577 70.5
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.6e-234 816.2 574 70.0
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.7e-234 815.5 577 70.9
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 5.9e-234 814.3 577 70.4
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.0e-233 813.5 560 71.4
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.7e-233 812.8 575 69.7
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.0e-233 811.2 577 70.7
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.1e-232 810.1 548 73.4
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 3.3e-232 808.5 542 74.2
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 7.3e-232 807.4 578 70.1
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 6.2e-231 804.3 577 68.5
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.1e-230 802.0 577 69.8
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 5.2e-230 801.2 550 72.0
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 3.4e-229 798.5 581 69.5
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 4.4e-229 798.1 578 68.7
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 9.8e-229 797.0 574 69.0
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.2e-228 795.8 574 68.5
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 4.9e-228 794.7 578 68.0
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.4e-227 793.1 578 67.8
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.4e-227 793.1 579 68.0
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 2.4e-227 792.3 574 68.1
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 7.0e-227 790.8 555 70.1
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.3e-225 786.6 574 69.0
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.7e-225 786.2 531 72.7
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.3e-225 785.8 569 69.2
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 5.0e-225 784.6 578 68.0
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 6.2e-223 777.7 620 65.6
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.9e-219 766.1 620 63.9
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.1e-218 762.7 575 66.1
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 4.6e-218 761.5 576 68.2
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.3e-217 760.0 570 66.7
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 5.1e-217 758.1 573 66.5
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 1.1e-216 756.9 560 67.3
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 3.3e-216 755.4 583 65.7
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 6.2e-215 751.1 580 65.5
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 7.6e-213 744.2 563 65.7
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.4e-211 739.2 580 64.8
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.3e-209 733.4 508 71.7
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 4.3e-208 728.4 504 70.6
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 2.1e-207 726.1 577 64.8
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.2e-204 716.1 575 62.6
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.4e-203 712.6 568 63.9
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.1e-200 703.7 567 60.5
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.2e-196 689.5 568 62.3
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.9e-192 676.4 467 71.5
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.3e-191 673.7 583 60.7
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.5e-184 650.2 568 56.3
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 1.7e-180 636.7 563 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 6.7e-169 598.2 568 53.9
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.2e-167 593.2 450 66.9
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 8.2e-167 591.3 573 55.0
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 8.2e-167 591.3 409 72.1
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 8.5e-164 581.3 340 83.5
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.4e-163 580.5 409 69.2
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.8e-159 566.2 504 55.4
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.7e-156 557.0 409 68.0
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 6.6e-132 475.3 340 68.8
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.0e-128 463.8 311 73.0
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 8.3e-127 458.4 308 73.1
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.7e-125 453.4 357 63.9
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 4.7e-122 442.6 341 63.6
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.4e-118 429.1 246 87.4
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 8.3e-111 405.2 288 69.8
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.4e-110 402.5 292 67.1
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 8.6e-108 395.2 290 69.0
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 5.1e-92 342.8 238 71.8
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 5.8e-88 329.3 233 72.1
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 7.9e-77 292.4 267 56.9
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 2.3e-76 290.8 258 59.7
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.0e-48 198.0 137 71.5
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.0e-48 198.0 138 71.0
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 1.3e-47 195.3 180 57.2
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.2e-47 194.5 139 69.1
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.1e-46 192.2 139 68.3
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 4.2e-46 190.3 140 67.1
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 7.4e-43 179.5 128 69.5
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 2.2e-31 141.4 98 69.4
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 3.6e-29 134.0 121 55.4
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 6.5e-23 113.2 106 54.7
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 3.6e-21 107.5 64 75.0
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 4.7e-21 107.1 64 75.0
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 6.1e-21 106.7 59 76.3
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.8e-20 105.1 64 73.4
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 3.0e-20 104.4 64 73.4
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.1e-17 92.8 63 71.4
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-16 92.4 63 71.4
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 5.9e-16 90.1 73 60.3
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.0e-15 89.4 513 25.3
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.7e-15 88.6 244 26.6
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-13 82.4 51 74.5
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 2.0e-08 65.1 54 50.0
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 2.5e-06 58.2 64 57.8


User provided reference genes

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