Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 0.0e+00 1499.6 805 100.0
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 0.0e+00 1475.3 805 98.3
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 0.0e+00 1473.0 821 97.3
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 0.0e+00 1444.9 848 93.2
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 0.0e+00 1414.8 805 93.5
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 0.0e+00 1401.0 805 92.5
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 0.0e+00 1379.4 805 91.3
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 0.0e+00 1376.7 805 90.9
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 0.0e+00 1366.3 803 90.9
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 0.0e+00 1363.6 805 90.7
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 0.0e+00 1345.1 801 88.9
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 0.0e+00 1237.6 802 82.2
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 0.0e+00 1233.0 805 84.2
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 1.1e-305 1053.1 819 68.1
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 1.9e-302 1042.3 819 67.0
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 2.4e-302 1042.0 819 67.3
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 5.5e-302 1040.8 815 67.0
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.8e-300 1035.8 821 67.1
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 6.7e-300 1033.9 821 66.9
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 8.7e-300 1033.5 821 66.6
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 7.4e-299 1030.4 818 66.7
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 1.3e-298 1029.6 817 67.9
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 1.3e-298 1029.6 817 66.5
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 6.2e-298 1027.3 824 66.9
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 3.1e-297 1025.0 823 66.6
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 2.5e-294 1015.4 856 65.0
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 3.9e-292 1008.1 816 66.9
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 2.5e-291 1005.4 819 65.2
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 9.6e-291 1003.4 821 65.9
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.6e-290 1002.7 819 65.2
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 2.4e-289 998.8 819 65.3
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 9.0e-289 996.9 819 64.7
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.5e-288 996.1 819 65.1
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 1.5e-288 996.1 820 65.2
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 1.3e-287 993.0 822 65.3
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 3.2e-286 988.4 808 66.7
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.3e-284 982.2 826 63.9
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 2.5e-283 978.8 785 66.4
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 3.3e-283 978.4 821 63.8
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 7.4e-283 977.2 821 63.8
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 4.8e-282 974.5 821 64.6
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.4e-281 973.0 822 64.1
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 3.1e-281 971.8 817 64.5
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 1.5e-280 969.5 819 64.3
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 2.6e-280 968.8 819 63.1
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 2.6e-280 968.8 819 64.5
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.3e-279 966.5 821 64.2
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.7e-279 966.1 881 61.7
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 5.0e-279 964.5 815 64.5
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 1.1e-278 963.4 843 62.0
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.4e-278 963.0 822 62.8
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 4.2e-278 961.4 821 63.7
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 4.2e-278 961.4 813 62.2
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 2.0e-275 952.6 787 65.2
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 1.7e-274 949.5 820 62.0
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 2.2e-274 949.1 818 62.8
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.2e-274 949.1 819 63.4
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 4.8e-274 948.0 824 62.5
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 1.1e-273 946.8 813 61.6
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 1.1e-273 946.8 819 62.0
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 1.8e-273 946.0 813 61.5
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 2.4e-273 945.7 820 61.7
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 4.1e-273 944.9 819 62.3
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 5.9e-272 941.0 819 62.0
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.0e-271 940.3 745 67.2
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 6.5e-271 937.6 819 62.1
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 7.2e-270 934.1 821 61.8
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 1.2e-269 933.3 828 61.2
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 1.2e-269 933.3 845 59.9
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 3.6e-269 931.8 814 62.8
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 4.7e-269 931.4 820 61.3
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 6.7e-268 927.5 829 62.0
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 5.3e-265 917.9 822 60.3
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 2.9e-263 912.1 841 60.0
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.1e-262 910.2 816 60.4
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 1.2e-261 906.7 816 60.7
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 4.0e-260 901.7 807 61.3
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.3e-258 896.7 530 93.8
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 4.8e-258 894.8 816 59.7
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 6.3e-258 894.4 822 60.3
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 8.2e-258 894.0 745 64.2
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 2.9e-255 885.6 809 59.7
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.9e-254 882.9 817 59.4
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 3.2e-254 882.1 821 59.3
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 7.2e-254 880.9 754 63.3
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 4.7e-253 878.2 925 55.6
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 4.7e-253 878.2 832 59.6
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 8.0e-253 877.5 857 57.4
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 2.7e-248 862.4 817 59.1
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 7.0e-241 837.8 817 56.5
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 2.9e-239 832.4 821 55.9
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 7.8e-224 781.2 818 57.0
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 2.1e-221 773.1 820 54.1
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.4e-219 765.8 685 61.9
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.3e-207 727.2 862 49.5
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 1.7e-202 710.3 662 59.4
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 6.7e-183 645.2 594 59.3
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 8.7e-167 591.7 465 75.7
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 2.4e-164 583.6 779 43.3
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 4.1e-164 582.8 827 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 6.9e-164 582.0 750 45.3
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 1.4e-159 567.8 622 53.4
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 4.1e-140 503.1 862 38.3
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 5.9e-139 499.2 810 39.0
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 5.0e-138 496.1 831 39.1
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.9e-137 494.2 379 66.2
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 2.7e-136 490.3 324 75.3
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.4e-132 478.0 316 83.5
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.7e-122 444.5 492 52.0
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 9.8e-118 428.7 405 58.5
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.2e-102 378.6 269 68.8
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 8.3e-101 372.5 255 72.9
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.5e-89 335.1 275 58.9
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.9e-75 286.2 241 65.1
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 2.5e-52 211.5 797 25.3
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 5.5e-52 210.3 119 93.3
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.9e-44 185.3 354 37.9
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 2.8e-40 171.4 833 22.9
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.0e-38 165.2 163 54.0
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.0e-38 165.2 122 71.3
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 6.5e-37 160.2 220 43.6
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 3.5e-30 137.9 93 68.8
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 5.5e-28 130.6 101 67.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.3e-24 119.4 235 36.6
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 7.7e-22 110.2 111 51.4
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.0e-21 109.8 69 82.6
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 1.5e-20 105.9 70 68.6
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 1.5e-20 105.9 70 68.6
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 2.1e-19 102.1 69 66.7
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 2.7e-19 101.7 229 39.3
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.3e-16 92.8 141 40.4
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 2.0e-14 85.5 86 50.0
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.0e-14 85.5 61 73.8
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 6.6e-13 80.5 69 62.3
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 5.2e-10 70.9 129 36.4
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.7e-08 64.7 47 70.2
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 3.5e-06 58.2 67 47.8


User provided reference genes

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