Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 2.3e-176 622.1 303 100.0
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 2.3e-176 622.1 303 100.0
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 1.3e-171 606.3 303 97.4
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 9.6e-167 590.1 303 95.0
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 1.1e-165 586.6 303 94.4
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 7.6e-148 527.3 312 84.0
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 3.2e-146 521.9 298 85.2
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 1.3e-142 510.0 312 82.4
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 1.8e-141 506.1 301 83.4
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 3.2e-138 495.4 292 81.5
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 8.2e-134 480.7 289 79.9
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 4.2e-130 468.4 312 77.2
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 1.0e-128 463.8 384 65.1
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 1.3e-123 446.8 299 73.9
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 1.4e-109 400.2 286 66.4
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 1.6e-108 396.7 300 62.3
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 2.7e-108 396.0 291 64.6
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 7.7e-108 394.4 286 64.7
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 1.7e-107 393.3 285 64.9
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 2.9e-107 392.5 286 64.3
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 5.0e-107 391.7 293 62.8
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 8.5e-107 391.0 288 67.0
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 1.1e-106 390.6 287 63.8
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 1.5e-106 390.2 286 64.0
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 2.5e-106 389.4 291 64.3
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 2.5e-106 389.4 288 64.6
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 3.2e-106 389.0 286 62.9
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 7.2e-106 387.9 289 65.1
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 9.4e-106 387.5 286 63.6
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 1.2e-105 387.1 286 63.6
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 2.1e-105 386.3 287 62.4
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 2.1e-105 386.3 282 64.2
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 4.7e-105 385.2 290 62.4
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 1.0e-104 384.0 286 61.9
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 1.4e-104 383.6 297 63.3
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 2.3e-104 382.9 287 63.4
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 2.3e-104 382.9 291 63.2
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 3.0e-104 382.5 285 63.5
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 1.5e-103 380.2 294 62.6
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 3.4e-103 379.0 287 61.3
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 4.4e-103 378.6 294 62.9
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 4.4e-103 378.6 284 63.4
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 4.4e-103 378.6 290 63.8
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 7.5e-103 377.9 287 63.8
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 9.8e-103 377.5 288 63.2
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 1.7e-102 376.7 283 62.9
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 1.7e-102 376.7 296 61.5
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 3.7e-102 375.6 286 62.6
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 6.3e-102 374.8 287 63.8
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 6.3e-102 374.8 287 63.8
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 8.3e-102 374.4 294 60.5
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 8.3e-102 374.4 290 62.8
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 1.1e-101 374.0 284 63.7
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.1e-101 374.0 283 64.0
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 1.1e-101 374.0 287 64.1
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 1.4e-101 373.6 284 62.0
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 1.4e-101 373.6 296 60.8
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 5.4e-101 371.7 289 60.2
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 1.2e-100 370.5 287 64.1
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 1.6e-100 370.2 289 60.6
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 1.6e-100 370.2 280 62.9
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 5.9e-100 368.2 286 61.5
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 5.9e-100 368.2 290 62.4
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 7.7e-100 367.9 285 61.1
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 1.0e-99 367.5 310 59.0
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 1.3e-99 367.1 282 63.1
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 1.3e-99 367.1 286 61.9
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 2.5e-98 362.8 286 61.9
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 4.2e-98 362.1 289 61.6
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 5.5e-98 361.7 286 60.8
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 7.2e-98 361.3 280 63.6
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 9.5e-98 360.9 283 62.2
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.2e-97 360.5 317 56.5
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 1.6e-97 360.1 308 58.8
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 3.6e-97 359.0 284 58.8
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 1.4e-96 357.1 285 60.0
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 4.0e-96 355.5 346 53.2
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 8.8e-96 354.4 285 58.9
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 2.0e-95 353.2 292 60.3
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 1.4e-93 347.1 289 59.9
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 1.4e-93 347.1 289 58.8
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 9.2e-93 344.4 291 59.5
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 8.6e-91 337.8 260 61.5
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 8.6e-91 337.8 291 56.4
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 4.0e-88 328.9 285 59.6
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 1.7e-86 323.6 285 57.2
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 1.6e-84 317.0 208 77.4
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 1.3e-83 313.9 282 54.6
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 1.9e-82 310.1 287 56.8
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 3.3e-82 309.3 287 54.0
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 1.2e-81 307.4 278 55.4
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 1.1e-80 304.3 280 55.0
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 1.1e-80 304.3 281 53.7
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 5.2e-80 302.0 276 56.5
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 3.4e-79 299.3 218 66.1
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 4.4e-79 298.9 228 61.8
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 5.8e-79 298.5 280 53.6
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.9e-78 295.4 285 53.7
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 8.3e-78 294.7 287 51.2
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 7.3e-74 281.6 205 64.9
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 4.4e-71 272.3 260 53.5
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 1.2e-68 264.2 441 39.2
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 1.8e-64 250.4 179 64.2
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 5.2e-64 248.8 341 40.8
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 6.4e-62 241.9 285 46.3
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 2.3e-59 233.4 283 44.5
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 6.6e-51 205.3 173 57.2
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 1.5e-50 204.1 197 53.8
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 1.3e-49 201.1 159 60.4
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 5.8e-31 139.0 143 53.1
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 3.2e-29 133.3 108 57.4
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 4.2e-29 132.9 110 61.8
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 5.5e-29 132.5 262 32.1
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 5.1e-27 125.9 204 37.3
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 1.3e-25 121.3 258 31.4
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 4.6e-20 102.8 71 70.4
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 1.4e-13 81.3 67 53.7
CARHR154620 Cardamine hirsuta HOM05D006681 ORTHO05D008338 6.1e-12 75.9 54 75.9
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 8.8e-11 72.0 53 67.9
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 1.5e-10 71.2 59 61.0


User provided reference genes

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