Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 5.7e-192 674.1 341 100.0
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 2.4e-110 402.9 242 89.7
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 8.5e-71 271.6 257 64.2
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 5.2e-44 182.6 102 96.1
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 1.4e-41 174.5 124 80.6
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 6.8e-36 155.6 102 81.4
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 7.5e-35 152.1 102 79.4
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.3e-34 151.4 102 81.4
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 6.4e-34 149.1 103 79.6
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 8.3e-34 148.7 109 75.2
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 4.6e-32 142.9 107 71.0
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 3.9e-31 139.8 104 73.1
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.9e-30 137.5 102 70.6
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 2.1e-29 134.0 102 69.6
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 2.1e-29 134.0 102 68.6
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 4.7e-29 132.9 102 69.6
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 1.8e-28 131.0 102 66.7
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 5.2e-28 129.4 102 67.6
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 8.9e-28 128.6 102 65.7
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 1.2e-27 128.3 102 66.7
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.2e-27 128.3 102 66.7
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.2e-27 128.3 103 69.9
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 2.0e-27 127.5 102 65.7
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 3.4e-27 126.7 103 68.9
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 5.8e-27 125.9 103 68.0
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 5.8e-27 125.9 103 68.0
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 7.5e-27 125.6 102 64.7
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 9.8e-27 125.2 103 68.0
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 2.2e-26 124.0 103 67.0
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 2.2e-26 124.0 103 67.0
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 1.1e-25 121.7 75 86.7
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 3.0e-23 113.6 105 61.9
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 3.0e-23 113.6 103 64.1
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.1e-22 111.7 96 64.6
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.9e-22 110.9 96 63.5
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 4.3e-22 109.8 103 61.2
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 4.3e-22 109.8 103 62.1
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.3e-22 109.8 96 63.5
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 4.7e-21 106.3 103 60.2
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.1e-20 105.1 103 59.2
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.8e-20 104.4 104 56.7
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.8e-20 104.4 104 56.7
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 4.0e-20 103.2 89 64.0
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 4.0e-20 103.2 89 64.0
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 4.0e-20 103.2 89 65.2
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 5.2e-20 102.8 89 64.0
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 5.2e-20 102.8 89 64.0
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 6.8e-20 102.4 91 62.6
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 8.9e-20 102.1 91 63.7
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 1.5e-19 101.3 89 61.8
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.5e-19 101.3 91 60.4
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.0e-19 100.9 103 60.2
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.0e-19 100.9 103 60.2
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 2.0e-19 100.9 104 57.7
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 2.0e-19 100.9 96 61.5
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 2.6e-19 100.5 87 65.5
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 5.8e-19 99.4 103 58.3
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 5.8e-19 99.4 78 70.5
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 7.5e-19 99.0 95 58.9
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 7.5e-19 99.0 88 62.5
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 9.9e-19 98.6 83 67.5
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.3e-18 98.2 87 63.2
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 1.7e-18 97.8 92 63.0
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.7e-18 97.8 105 55.2
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 2.2e-18 97.4 91 60.4
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 2.2e-18 97.4 104 55.8
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 2.2e-18 97.4 104 55.8
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 3.7e-18 96.7 91 59.3
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 4.9e-18 96.3 90 61.1
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 4.9e-18 96.3 85 63.5
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 8.3e-18 95.5 94 57.4
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 8.3e-18 95.5 103 53.4
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 8.3e-18 95.5 96 57.3
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 8.3e-18 95.5 91 62.6
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 1.1e-17 95.1 103 56.3
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.1e-17 95.1 91 59.3
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 1.4e-17 94.7 89 60.7
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 1.4e-17 94.7 91 60.4
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 1.4e-17 94.7 91 60.4
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.9e-17 94.4 110 52.7
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 3.2e-17 93.6 89 59.6
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 3.2e-17 93.6 89 60.7
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 5.4e-17 92.8 105 56.2
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 5.4e-17 92.8 91 61.5
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 7.1e-17 92.4 91 60.4
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 9.2e-17 92.0 105 56.2
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 1.2e-16 91.7 91 60.4
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.2e-16 91.7 96 56.2
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.2e-16 91.7 96 56.2
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.2e-16 91.7 96 56.2
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 1.2e-16 91.7 88 60.2
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 1.6e-16 91.3 140 45.7
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.7e-16 90.5 83 63.9
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 3.5e-16 90.1 95 55.8
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 6.0e-16 89.4 104 53.8
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 6.0e-16 89.4 88 56.8
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 7.8e-16 89.0 104 52.9
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.0e-15 88.6 104 51.9
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 1.3e-15 88.2 104 53.8
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.7e-15 87.8 104 52.9
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.7e-15 87.8 89 55.1
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 1.7e-15 87.8 120 48.3
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 3.0e-15 87.0 90 60.0
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 3.9e-15 86.7 86 58.1
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 3.9e-15 86.7 91 59.3
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 5.1e-15 86.3 103 52.4
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.1e-15 86.3 103 51.5
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.6e-15 85.9 103 51.5
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 8.6e-15 85.5 89 52.8
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 8.6e-15 85.5 92 50.0
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 1.1e-14 85.1 90 54.4
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 2.5e-14 84.0 75 64.0
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 2.5e-14 84.0 89 56.2
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 2.5e-14 84.0 87 56.3
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 3.3e-14 83.6 103 50.5
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 3.3e-14 83.6 91 54.9
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 4.3e-14 83.2 90 55.6
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 5.6e-14 82.8 103 50.5
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 5.6e-14 82.8 103 51.5
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.2e-13 81.6 98 52.0
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 1.2e-13 81.6 91 57.1
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 1.2e-13 81.6 107 50.5
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.6e-13 81.3 99 43.4
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 2.1e-13 80.9 95 52.6
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.8e-13 80.5 103 40.8
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 2.8e-13 80.5 82 56.1
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 3.6e-13 80.1 140 42.1
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 4.7e-13 79.7 93 45.2
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 4.7e-13 79.7 86 54.7
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 6.2e-13 79.3 85 54.1
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 1.4e-12 78.2 90 53.3
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.4e-12 78.2 90 52.2
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.8e-12 77.8 83 54.2
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 3.1e-12 77.0 72 59.7
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.0e-12 76.6 103 47.6
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 4.0e-12 76.6 103 47.6
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.2e-12 76.3 103 45.6
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 2.0e-11 74.3 80 55.0
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 2.0e-11 74.3 79 50.6
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 3.4e-11 73.6 52 73.1
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 3.4e-11 73.6 89 49.4
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 5.8e-11 72.8 91 53.8
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 5.8e-11 72.8 79 58.2
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 5.8e-11 72.8 89 51.7
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 5.8e-11 72.8 91 50.5
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 7.6e-11 72.4 92 50.0
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.7e-10 71.2 90 52.2
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.2e-10 70.9 105 45.7
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 4.9e-10 69.7 94 47.9
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 6.4e-10 69.3 85 48.2
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-09 68.2 68 55.9
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-09 68.2 68 55.9
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.9e-09 67.8 90 46.7
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.9e-09 67.8 66 57.6
CARHR191280 Cardamine hirsuta HOM05D003660 ORTHO05D003415 3.2e-09 67.0 51 64.7
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 3.2e-09 67.0 76 50.0
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 5.4e-09 66.2 89 46.1
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 7.1e-09 65.9 83 43.4
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 9.2e-09 65.5 90 45.6
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.2e-08 65.1 90 47.8
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.1e-08 64.3 98 43.9
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.7e-08 63.9 113 41.6
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 2.7e-08 63.9 89 46.1
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 4.6e-08 63.2 77 50.6
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 6.0e-08 62.8 53 60.4
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 1.7e-07 61.2 85 43.5
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 1.7e-07 61.2 86 43.0
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 2.3e-07 60.8 73 53.4
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 3.0e-07 60.5 109 44.0
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 1.1e-06 58.5 86 43.0
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 1.1e-06 58.5 106 39.6
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 1.5e-06 58.2 64 54.7
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 1.9e-06 57.8 82 43.9
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 2.5e-06 57.4 52 57.7
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 3.3e-06 57.0 48 64.6
TPR.G23220 Trifolium pratense HOM05D003660 ORTHO05D003415 4.3e-06 56.6 64 54.7
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 4.3e-06 56.6 72 48.6
QL07p037620 Quercus lobata HOM05D003660 ORTHO05D003415 5.6e-06 56.2 56 55.4
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 7.3e-06 55.8 84 51.2
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 9.6e-06 55.5 53 54.7


User provided reference genes

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