Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 0.0e+00 1092.8 563 100.0
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 0.0e+00 1092.8 563 100.0
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 0.0e+00 1090.1 563 99.6
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 2.7e-311 1071.2 564 98.2
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 3.2e-309 1064.3 564 97.7
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.2e-297 1025.0 567 93.8
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 4.5e-295 1017.3 567 92.9
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.7e-294 1015.4 567 92.8
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 1.8e-291 1005.4 565 91.7
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.5e-290 1002.3 567 91.0
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 4.8e-289 997.3 567 90.5
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 8.2e-289 996.5 567 90.7
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.8e-288 995.3 567 90.7
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.8e-283 978.8 564 89.9
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 9.8e-282 973.0 565 88.8
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 8.0e-276 953.4 546 89.6
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.7e-270 935.6 568 83.6
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.6e-246 853.6 561 76.3
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.1e-245 853.2 550 77.6
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 9.5e-245 850.1 561 76.5
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 1.6e-244 849.4 570 76.5
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.1e-244 849.0 561 75.9
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.7e-244 847.8 561 75.8
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.4e-243 846.3 551 77.3
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.4e-243 846.3 555 76.9
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.8e-243 845.9 554 78.0
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 3.1e-243 845.1 555 76.4
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.1e-243 845.1 566 76.1
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.1e-243 845.1 555 76.8
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 2.6e-242 842.0 570 76.1
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 3.4e-242 841.6 554 74.5
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 9.9e-242 840.1 554 75.6
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 2.9e-241 838.6 554 77.1
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.4e-240 836.3 573 74.0
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 7.1e-240 833.9 554 76.7
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.8e-239 830.5 555 76.0
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 3.9e-238 828.2 564 74.6
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.1e-238 827.8 554 76.0
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 6.6e-238 827.4 566 73.3
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.5e-237 825.5 573 72.6
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 9.6e-237 823.5 563 74.1
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 2.8e-236 822.0 623 68.4
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 4.7e-236 821.2 570 72.5
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.1e-235 820.1 563 72.8
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 3.1e-235 818.5 550 74.4
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 4.0e-235 818.1 548 74.8
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 5.3e-235 817.8 554 74.4
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.9e-235 817.4 569 74.0
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 6.9e-235 817.4 568 72.2
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.2e-234 816.6 552 74.5
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.5e-234 816.2 552 73.9
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.6e-234 815.5 552 73.9
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.4e-234 815.1 552 73.9
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 5.8e-234 814.3 561 72.7
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 5.8e-234 814.3 566 71.9
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.3e-233 813.1 554 73.1
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.7e-233 812.8 576 72.9
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.1e-232 810.1 584 70.5
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 3.2e-232 808.5 570 72.1
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.6e-231 806.2 550 73.5
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.1e-231 805.8 563 72.5
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 2.7e-231 805.4 563 71.4
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 3.5e-231 805.1 570 71.6
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 4.6e-231 804.7 564 71.3
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.3e-230 803.1 550 73.5
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 5.1e-230 801.2 550 73.3
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.1e-229 800.0 560 71.1
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 7.3e-229 797.3 552 72.6
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 9.6e-229 797.0 528 74.4
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.6e-228 796.2 557 73.2
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.6e-228 796.2 555 72.3
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.8e-228 795.4 558 71.7
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 3.6e-228 795.0 557 72.7
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.1e-227 793.5 563 70.5
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.4e-227 793.1 557 71.8
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.4e-227 793.1 563 70.9
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 4.0e-227 791.6 570 70.7
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 1.5e-226 789.6 563 71.8
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.6e-226 788.9 541 74.3
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 7.6e-226 787.3 553 71.8
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 7.6e-226 787.3 555 71.7
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 7.6e-226 787.3 558 71.3
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.3e-225 786.6 558 70.8
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.7e-225 786.2 552 71.4
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.7e-225 786.2 551 73.1
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.9e-225 785.4 568 71.0
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.8e-225 785.0 562 71.9
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 4.9e-225 784.6 584 69.0
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.4e-224 783.1 554 71.8
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 3.2e-224 781.9 553 71.6
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 3.2e-224 781.9 570 69.1
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.0e-222 776.9 563 71.2
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.3e-222 776.5 601 67.7
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.8e-222 776.2 547 72.4
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 3.0e-222 775.4 547 72.0
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.1e-221 773.5 549 70.1
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 4.3e-221 771.5 555 71.9
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 7.4e-221 770.8 592 67.6
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 4.8e-220 768.1 545 71.2
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 6.9e-219 764.2 552 69.4
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.0e-218 762.7 555 70.5
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.6e-218 762.3 617 66.1
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 8.4e-217 757.3 600 66.3
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.2e-215 753.4 552 70.7
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.2e-215 753.4 566 68.4
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 6.0e-215 751.1 549 67.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 5.1e-214 748.0 534 69.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 5.6e-213 744.6 530 71.5
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 5.8e-210 734.6 519 70.3
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 1.3e-209 733.4 556 67.8
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-208 730.3 406 91.9
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.4e-208 729.9 636 61.8
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 2.5e-208 729.2 560 65.9
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.2e-207 726.9 406 91.6
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 2.1e-207 726.1 550 69.1
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 6.7e-206 721.1 559 66.2
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 1.5e-205 719.9 548 65.5
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.6e-204 716.5 403 91.1
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 4.2e-200 701.8 576 62.3
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 6.1e-199 698.0 469 74.8
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.0e-193 680.6 433 78.3
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 5.1e-190 668.3 552 62.7
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.6e-186 656.0 474 69.6
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 3.5e-186 655.6 497 64.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.3e-185 653.7 552 59.2
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.5e-181 640.2 474 68.6
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 5.3e-179 631.7 542 59.2
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 3.0e-174 615.9 550 58.4
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.5e-162 575.5 410 70.5
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 7.8e-154 548.1 359 78.3
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 7.8e-146 521.5 364 70.6
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.2e-141 507.7 540 48.7
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.3e-137 494.2 525 47.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.9e-124 449.9 332 68.4
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 4.0e-118 429.5 272 77.9
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 2.5e-112 410.2 337 63.5
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.8e-94 350.9 220 76.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 8.2e-79 298.9 195 72.3
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.4e-72 276.6 197 74.6
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 5.2e-57 226.5 194 61.9
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.5e-51 208.4 177 63.8
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 7.7e-45 186.0 152 61.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 6.1e-42 176.4 147 61.9
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 2.6e-40 171.0 117 69.2
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-37 162.2 186 51.1
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.3e-28 132.1 85 81.2
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.4e-22 111.3 77 63.6
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 9.2e-22 109.4 82 67.1
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.6e-21 108.6 82 62.2
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 6.0e-21 106.7 127 46.5
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.5e-19 102.1 93 53.8
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 4.3e-19 100.5 82 62.2
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 3.8e-07 60.8 55 52.7
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 6.4e-07 60.1 298 26.8


User provided reference genes

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