Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 5.8e-98 360.9 187 100.0
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 5.8e-98 360.9 187 100.0
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 5.8e-98 360.9 187 100.0
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 6.0e-95 350.9 187 96.8
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 6.0e-95 350.9 187 96.8
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 6.0e-95 350.9 187 95.7
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 2.3e-94 349.0 187 95.7
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.3e-92 343.2 187 94.7
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 2.8e-92 342.0 187 94.1
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 1.7e-89 332.8 187 90.4
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 2.2e-89 332.4 187 90.9
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 5.0e-89 331.3 187 91.4
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 9.0e-83 310.5 185 85.4
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 2.9e-81 305.4 183 82.5
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.5e-74 283.1 184 76.1
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 2.0e-74 282.7 184 76.6
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 6.5e-73 277.7 184 73.4
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 1.1e-72 276.9 184 72.8
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.9e-72 276.2 184 73.9
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.2e-72 275.4 183 73.2
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 4.2e-72 275.0 181 73.5
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 5.5e-72 274.6 184 72.8
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 5.5e-72 274.6 185 74.1
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 9.4e-72 273.9 185 73.0
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 9.4e-72 273.9 183 72.7
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.2e-71 273.5 184 72.3
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 4.7e-71 271.6 185 74.6
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 6.1e-71 271.2 182 71.4
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 7.9e-71 270.8 184 71.7
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.4e-70 270.0 184 73.9
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 1.8e-70 269.6 181 71.8
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 2.3e-70 269.2 185 74.1
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 2.3e-70 269.2 184 72.3
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 8.8e-70 267.3 184 70.7
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 1.1e-69 266.9 183 71.6
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 1.5e-69 266.5 182 73.6
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 2.6e-69 265.8 181 71.3
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 7.4e-69 264.2 181 71.8
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 1.3e-68 263.5 184 70.7
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 1.3e-68 263.5 184 67.4
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 1.3e-68 263.5 182 73.1
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.8e-68 262.3 179 71.5
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 2.8e-68 262.3 179 72.6
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 3.7e-68 261.9 182 70.3
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 4.8e-68 261.5 181 69.6
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 6.3e-68 261.2 185 70.3
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.1e-67 260.4 181 70.7
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.1e-67 260.4 183 68.9
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.4e-67 260.0 179 72.1
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 1.4e-67 260.0 177 73.4
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.8e-67 259.6 180 71.1
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.4e-67 259.2 179 70.4
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 2.4e-67 259.2 179 72.1
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 5.3e-67 258.1 184 67.9
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 7.0e-67 257.7 184 68.5
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 7.0e-67 257.7 182 68.7
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 7.0e-67 257.7 179 70.4
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 7.0e-67 257.7 182 69.8
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.2e-66 256.9 182 69.2
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 2.0e-66 256.1 178 68.5
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 2.6e-66 255.8 178 69.7
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 2.6e-66 255.8 178 69.7
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 4.5e-66 255.0 184 67.9
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 5.9e-66 254.6 185 67.0
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 7.7e-66 254.2 180 69.4
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 2.2e-65 252.7 183 67.8
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 2.9e-65 252.3 182 65.9
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 6.5e-65 251.1 180 68.3
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 8.5e-65 250.8 176 68.8
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 8.5e-65 250.8 185 65.9
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 1.1e-64 250.4 182 67.0
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 1.5e-64 250.0 164 75.6
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.9e-64 249.6 176 68.8
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 2.1e-63 246.1 182 65.9
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 2.7e-63 245.7 182 65.9
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 8.0e-63 244.2 179 64.8
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 1.0e-62 243.8 182 64.3
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 1.4e-62 243.4 177 65.0
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 1.4e-62 243.4 180 65.6
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.4e-62 243.4 182 63.2
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 3.0e-62 242.3 181 63.5
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 1.1e-61 240.4 178 64.6
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 1.5e-61 240.0 182 63.2
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 4.4e-61 238.4 178 64.6
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 4.4e-61 238.4 180 63.9
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 1.3e-60 236.9 177 64.4
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 1.3e-60 236.9 183 65.0
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 2.2e-60 236.1 178 65.7
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 2.8e-60 235.7 182 63.2
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 3.7e-60 235.3 178 65.7
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 2.4e-59 232.6 181 62.4
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 5.3e-59 231.5 182 62.6
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 7.7e-58 227.6 171 66.1
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 1.7e-57 226.5 182 62.1
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 3.8e-57 225.3 180 60.6
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 6.5e-57 224.6 176 60.2
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 6.5e-57 224.6 193 60.1
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 7.5e-53 211.1 178 59.0
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.0e-49 200.7 184 53.8
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.3e-49 200.3 194 54.1
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.2e-49 199.5 202 51.5
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 5.0e-49 198.4 201 51.2
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 9.4e-48 194.1 142 67.6
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 7.5e-45 184.5 137 66.4
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 9.8e-45 184.1 175 54.9
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 3.5e-42 175.6 158 58.9
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 4.5e-42 175.3 116 76.7
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 3.8e-41 172.2 158 56.3
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 4.7e-39 165.2 107 78.5
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 1.1e-35 154.1 106 67.9
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 4.1e-35 152.1 169 44.4
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 1.3e-33 147.1 178 43.3
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.1e-32 144.1 181 43.6
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.5e-32 143.7 183 44.3
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 1.9e-32 143.3 164 45.7
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.2e-29 134.0 175 40.0
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 7.5e-29 131.3 187 40.6
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 2.4e-27 126.3 93 63.4
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 6.0e-26 121.7 170 38.8
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.5e-24 117.1 132 47.0
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.0e-22 109.0 95 53.7
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 5.8e-21 105.1 76 65.8
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 6.0e-18 95.1 84 58.3
Os05g0482501 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 8.6e-09 64.7 132 33.3
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 3.6e-07 59.3 71 36.6
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 4.7e-07 58.9 186 25.3


User provided reference genes

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