Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p68920 Brassica napus HOM05D025096 ORTHO05D022059 1.3e-54 216.1 105 100.0
BolC3t19147H Brassica oleracea HOM05D025096 ORTHO05D022059 1.0e-27 126.7 105 66.7
C02p41410 Brassica napus HOM05D025096 ORTHO05D022059 5.3e-24 114.4 105 60.0
Thhalv10012836m.g Eutrema salsugineum HOM05D000793 ORTHO05D000783 3.7e-17 91.7 103 52.4
Sp6g27965 Schrenkiella parvula HOM05D000793 ORTHO05D000783 6.3e-17 90.9 103 51.5
CARHR197120 Cardamine hirsuta HOM05D000793 ORTHO05D000783 1.8e-16 89.4 103 51.5
BcaC03g18480 Brassica carinata HOM05D000793 ORTHO05D000783 3.1e-16 88.6 103 49.5
BcaNung02225 Brassica carinata HOM05D000793 ORTHO05D000783 3.1e-16 88.6 103 49.5
AL6G27060 Arabidopsis lyrata HOM05D000793 ORTHO05D000783 7.0e-16 87.4 103 49.5
AT5G16180 Arabidopsis thaliana HOM05D000793 ORTHO05D000783 4.5e-15 84.7 103 50.5
Carub.0006s1437 Capsella rubella HOM05D000793 ORTHO05D000783 4.5e-15 84.7 103 48.5
A02p03420 Brassica napus HOM05D000793 ORTHO05D000783 2.2e-14 82.4 103 49.5
BraA02t05313Z Brassica rapa HOM05D000793 ORTHO05D000783 2.2e-14 82.4 103 49.5
Aa31LG11G13420 Aethionema arabicum HOM05D000793 ORTHO05D000783 2.9e-14 82.0 103 48.5
THA.LOC104820940 Tarenaya hassleriana HOM05D000793 ORTHO05D000783 5.0e-14 81.3 103 45.6
BcaC03g18473 Brassica carinata HOM05D000793 ORTHO05D000783 2.5e-13 79.0 103 46.6
C02p08180 Brassica napus HOM05D000793 ORTHO05D000783 2.5e-13 79.0 103 46.6
BolC2t06742H Brassica oleracea HOM05D000793 ORTHO05D000783 2.5e-13 79.0 103 46.6
A09p19930 Brassica napus HOM05D025096 ORTHO05D022059 5.2e-11 71.2 34 97.1
BraA03t14354Z Brassica rapa HOM05D025096 ORTHO05D022059 5.2e-11 71.2 34 97.1
CANSAT78G1170 Cannabis sativa HOM05D000793 ORTHO05D000783 8.8e-11 70.5 103 38.8
VMungo1383G3712 Vigna mungo HOM05D000793 ORTHO05D000783 1.2e-10 70.1 103 38.8
arahy.Tifrunner.gnm1.ann1.USTW7R Arachis hypogaea HOM05D000793 ORTHO05D000783 2.6e-10 68.9 103 37.9
CSS0012068 Camellia sinensis var. sinensis HOM05D000793 ORTHO05D000783 2.6e-10 68.9 103 39.8
CSS0040604 Camellia sinensis var. sinensis HOM05D000793 ORTHO05D000783 2.6e-10 68.9 103 39.8
Cpa.g.sc170.50 Carica papaya HOM05D000793 ORTHO05D000783 2.6e-10 68.9 103 41.7
Medtr2g100660 Medicago truncatula HOM05D000793 ORTHO05D000783 2.6e-10 68.9 103 39.8
Ciclev10013368m.g Citrus clementina HOM05D000793 ORTHO05D000783 4.4e-10 68.2 103 38.8
Phvul.008G007700 Phaseolus vulgaris HOM05D000793 ORTHO05D000783 4.4e-10 68.2 103 36.9
TPR.G38736 Trifolium pratense HOM05D000793 ORTHO05D000783 4.4e-10 68.2 103 38.8
Glyma.18G295000 Glycine max HOM05D000793 ORTHO05D000783 9.8e-10 67.0 103 36.9
arahy.Tifrunner.gnm1.ann1.87GB58 Arachis hypogaea HOM05D000793 ORTHO05D000783 1.3e-09 66.6 103 35.0
arahy.Tifrunner.gnm1.ann1.LVM5YM Arachis hypogaea HOM05D000793 ORTHO05D000783 1.3e-09 66.6 103 35.0
Hma1.2p1_0075F.1_g039280 Hydrangea macrophylla HOM05D000793 ORTHO05D000783 1.7e-09 66.2 103 38.8
Peaxi162Scf00394g00815 Petunia axillaris HOM05D000793 ORTHO05D000783 1.7e-09 66.2 103 41.7
arahy.Tifrunner.gnm1.ann1.IR2EG3 Arachis hypogaea HOM05D000793 ORTHO05D000783 2.8e-09 65.5 102 33.3
Solyc02g086200.3 Solanum lycopersicum HOM05D000793 ORTHO05D000783 3.7e-09 65.1 100 40.0
Sopen02g030880 Solanum pennellii HOM05D000793 ORTHO05D000783 3.7e-09 65.1 100 40.0
PGSC0003DMG401026400 Solanum tuberosum HOM05D000793 ORTHO05D000783 3.7e-09 65.1 100 40.0
Atru.chr1.1644 Acer truncatum HOM05D000793 ORTHO05D000783 4.9e-09 64.7 103 38.8
Atru.chr1.1645 Acer truncatum HOM05D000793 ORTHO05D000783 4.9e-09 64.7 103 38.8
Cc07_g08670 Coffea canephora HOM05D000793 ORTHO05D000783 4.9e-09 64.7 103 36.9
Dinv33958 Davidia involucrata HOM05D000793 ORTHO05D000783 6.3e-09 64.3 103 36.9
Dinv34808 Davidia involucrata HOM05D000793 ORTHO05D000783 6.3e-09 64.3 103 36.9
Duzib052G0508 Durio zibethinus HOM05D000793 ORTHO05D000783 6.3e-09 64.3 100 39.0
Psat7g263480 Pisum sativum HOM05D000793 ORTHO05D000783 6.3e-09 64.3 103 38.8
Ca_20956_v3 Cicer arietinum L. HOM05D000793 ORTHO05D000783 8.3e-09 63.9 103 35.9
Lalb_Chr04g0257551 Lupinus albus HOM05D000793 ORTHO05D000783 1.1e-08 63.5 103 34.0
ECA238G0576 Erigeron canadensis HOM05D000793 ORTHO05D000783 1.4e-08 63.2 103 35.9
Lsat_1_v5_gn_2_79400 Lactuca sativa HOM05D000793 ORTHO05D000783 1.4e-08 63.2 103 36.9
Cfa007907 Carpinus fangiana HOM05D000793 ORTHO05D000783 1.8e-08 62.8 103 37.9
Nn4g24848 Nelumbo nucifera HOM05D000793 ORTHO05D000783 1.8e-08 62.8 103 37.9
Haze_14173 Corylus avellana HOM05D000793 ORTHO05D000783 3.1e-08 62.0 103 37.9
Lj1g0019544 Lotus japonicus HOM05D000793 ORTHO05D000783 3.1e-08 62.0 103 37.9
Potri.017G116700 Populus trichocarpa HOM05D000793 ORTHO05D000783 3.1e-08 62.0 103 37.9
QL02p050861 Quercus lobata HOM05D000793 ORTHO05D000783 3.1e-08 62.0 103 36.9
QL12p016370 Quercus lobata HOM05D000793 ORTHO05D000783 3.1e-08 62.0 103 36.9
AUR62009017 Chenopodium quinoa HOM05D000793 ORTHO05D000783 4.1e-08 61.6 103 36.9
Eucgr.F02508 Eucalyptus grandis HOM05D000793 ORTHO05D000783 4.1e-08 61.6 103 35.0
Os08g0360100 Oryza sativa ssp. japonica HOM05D000793 ORTHO05D000783 4.1e-08 61.6 103 35.9
Rhsim10G0069300 Rhododendron simsii HOM05D000793 ORTHO05D000783 4.1e-08 61.6 103 35.9
Sabra17G0096600 Salix brachista HOM05D000793 ORTHO05D000783 4.1e-08 61.6 103 39.8
Gorai.007G182400 Gossypium raimondii HOM05D000793 ORTHO05D000783 5.4e-08 61.2 103 35.9
Lj4A190G75 Lonicera japonica HOM05D000793 ORTHO05D000783 5.4e-08 61.2 103 34.0
Nitab4.5_0000912g0050 Nicotiana tabacum HOM05D000793 ORTHO05D000783 5.4e-08 61.2 103 38.8
Nitab4.5_0007990g0070 Nicotiana tabacum HOM05D000793 ORTHO05D000783 5.4e-08 61.2 103 38.8
Thecc.04G131100 Theobroma cacao HOM05D000793 ORTHO05D000783 5.4e-08 61.2 103 37.9
TWI74G1195 Tripterygium wilfordii HOM05D000793 ORTHO05D000783 5.4e-08 61.2 103 38.8
Gohir.A11G164200 Gossypium hirsutum HOM05D000793 ORTHO05D000783 7.0e-08 60.8 103 36.9
vmacro05535 Vaccinium macrocarpon HOM05D000793 ORTHO05D000783 9.2e-08 60.5 103 34.0
CAN.G625.36 Capsicum annuum HOM05D000793 ORTHO05D000783 1.2e-07 60.1 103 37.9
ClCG11G007830 Citrullus lanatus HOM05D000793 ORTHO05D000783 1.2e-07 60.1 103 34.0
COL.COLO4_09355 Corchorus olitorius HOM05D000793 ORTHO05D000783 1.2e-07 60.1 100 39.0
DCAR_025905 Daucus carota HOM05D000793 ORTHO05D000783 1.2e-07 60.1 103 36.9
Sc11g0008430 Simmondsia chinensis HOM05D000793 ORTHO05D000783 1.2e-07 60.1 103 35.9
SGA_v2.0_scaffold49G18113 Striga asiatica HOM05D000793 ORTHO05D000783 1.2e-07 60.1 103 35.0
Aqoxy3G00226 Aquilegia oxysepala HOM05D000793 ORTHO05D000783 1.6e-07 59.7 103 35.9
CsaV3_2G033770 Cucumis sativus L. HOM05D000793 ORTHO05D000783 1.6e-07 59.7 103 35.0
Gohir.D11G170500 Gossypium hirsutum HOM05D000793 ORTHO05D000783 1.6e-07 59.7 103 35.9
Hund13706 Selenicereus undatus HOM05D000793 ORTHO05D000783 1.6e-07 59.7 103 35.9
GSVIVG01031001001 Vitis vinifera HOM05D000793 ORTHO05D000783 1.6e-07 59.7 103 34.0
HanXRQChr14g0440471 Helianthus annuus HOM05D000793 ORTHO05D000783 2.0e-07 59.3 103 37.9
TAR629G2273 Trochodendron aralioides HOM05D000793 ORTHO05D000783 2.0e-07 59.3 103 35.9
TAR629G2628 Trochodendron aralioides HOM05D000793 ORTHO05D000783 2.0e-07 59.3 103 35.9
MELO3C008146.2 Cucumis melo HOM05D000793 ORTHO05D000783 2.7e-07 58.9 103 35.0
Sed0009672 Sechium edule HOM05D000793 ORTHO05D000783 2.7e-07 58.9 103 35.0
CiPaw.04G043500 Carya illinoinensis HOM05D000793 ORTHO05D000783 3.5e-07 58.5 103 35.0
Oeu050381.1 Olea europaea HOM05D000793 ORTHO05D000783 5.9e-07 57.8 102 35.3
PSO478G3590 Papaver somniferum HOM05D000793 ORTHO05D000783 5.9e-07 57.8 103 34.0
Actinidia15895 Actinidia chinensis HOM05D000793 ORTHO05D000783 7.7e-07 57.4 103 34.0
Prupe.3G145000 Prunus persica HOM05D000793 ORTHO05D000783 7.7e-07 57.4 103 35.9
MBI16_g42518_MAGBIO Magnolia biondii HOM05D000793 ORTHO05D000783 1.0e-06 57.0 102 31.4
MD09G1254900 Malus domestica HOM05D000793 ORTHO05D000783 1.0e-06 57.0 103 34.0
PGR004G0321 Punica granatum HOM05D000793 ORTHO05D000783 1.0e-06 57.0 94 37.2
CARHR152480 Cardamine hirsuta HOM05D000793 ORTHO05D022059 8.6e-06 53.9 50 60.0


User provided reference genes

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