Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02088 Brassica carinata HOM05D000718 ORTHO05D014279 1.2e-42 176.0 85 100.0
C03p68720 Brassica napus HOM05D000718 ORTHO05D014279 1.2e-42 176.0 85 100.0
BolC3t19125H Brassica oleracea HOM05D000718 ORTHO05D014279 1.2e-42 176.0 85 100.0
BraA01t04413Z Brassica rapa HOM05D000718 ORTHO05D014279 7.1e-35 150.2 84 83.3
BcaC06g33239 Brassica carinata HOM05D000718 ORTHO05D014279 1.4e-27 125.9 73 82.2
BolC7t45040H Brassica oleracea HOM05D000718 ORTHO05D014279 1.4e-27 125.9 73 82.2
A02p16980 Brassica napus HOM05D000718 ORTHO05D014279 3.5e-26 121.3 71 81.7
BraA02t06747Z Brassica rapa HOM05D000718 ORTHO05D014279 6.0e-26 120.6 73 78.1
BolC9t59605H Brassica oleracea HOM05D000718 ORTHO05D014279 1.8e-25 119.0 73 80.8
A05p02880 Brassica napus HOM05D000718 ORTHO05D014279 3.9e-25 117.9 69 81.2
Sp3g13140 Schrenkiella parvula HOM05D000718 ORTHO05D002712 8.7e-25 116.7 77 76.6
A08p16250 Brassica napus HOM05D000718 ORTHO05D014279 1.1e-24 116.3 69 79.7
CARHR089870 Cardamine hirsuta HOM05D000718 ORTHO05D002712 1.9e-24 115.5 77 75.3
Carub.0003s1459 Capsella rubella HOM05D000718 ORTHO05D002712 5.6e-24 114.0 77 74.0
Thhalv10022319m.g Eutrema salsugineum HOM05D000718 ORTHO05D002712 7.4e-24 113.6 77 74.0
AT3G14930 Arabidopsis thaliana HOM05D000718 ORTHO05D002712 9.6e-24 113.2 77 74.0
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 1.3e-23 112.8 77 72.7
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 1.3e-23 112.8 77 72.7
BolC5t33912H Brassica oleracea HOM05D000718 ORTHO05D002712 2.8e-23 111.7 77 71.4
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 3.7e-23 111.3 77 71.4
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 3.7e-23 111.3 77 71.4
AL3G27250 Arabidopsis lyrata HOM05D000718 ORTHO05D002712 6.2e-23 110.5 77 72.7
Cpa.g.sc77.4 Carica papaya HOM05D000718 ORTHO05D002712 6.2e-23 110.5 77 71.4
Atru.chr2.2151 Acer truncatum HOM05D000718 ORTHO05D002712 1.1e-22 109.8 77 70.1
Gohir.D01G042756 Gossypium hirsutum HOM05D000718 ORTHO05D002712 1.8e-22 109.0 77 70.1
Gorai.002G060900 Gossypium raimondii HOM05D000718 ORTHO05D003905 1.8e-22 109.0 77 70.1
Ciclev10021020m.g Citrus clementina HOM05D000718 ORTHO05D002712 3.1e-22 108.2 77 71.4
Aa31LG8G2130 Aethionema arabicum HOM05D000718 ORTHO05D002712 5.3e-22 107.5 77 70.1
Duzib213G0559 Durio zibethinus HOM05D000718 ORTHO05D002712 1.2e-21 106.3 77 67.5
Gorai.009G367900 Gossypium raimondii HOM05D000718 ORTHO05D002712 1.5e-21 105.9 77 68.8
CiPaw.11G160500 Carya illinoinensis HOM05D000718 ORTHO05D003905 2.0e-21 105.5 77 67.5
Potri.001G390800 Populus trichocarpa HOM05D000718 ORTHO05D002712 2.0e-21 105.5 77 68.8
THA.LOC104815572 Tarenaya hassleriana HOM05D000718 ORTHO05D002712 2.0e-21 105.5 77 67.5
Potri.011G109800 Populus trichocarpa HOM05D000718 ORTHO05D002712 2.6e-21 105.1 77 68.8
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 3.4e-21 104.8 77 67.5
Haze_09327 Corylus avellana HOM05D000718 ORTHO05D002712 3.4e-21 104.8 77 67.5
Dinv14992 Davidia involucrata HOM05D000718 ORTHO05D002712 3.4e-21 104.8 77 67.5
Gohir.A04G042000 Gossypium hirsutum HOM05D000718 ORTHO05D002712 3.4e-21 104.8 77 68.8
HanXRQChr17g0534531 Helianthus annuus HOM05D000718 ORTHO05D002712 3.4e-21 104.8 77 68.8
SalBow7G1873 Salvia bowleyana HOM05D000718 ORTHO05D002712 3.4e-21 104.8 77 67.5
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 3.4e-21 104.8 77 67.5
Ca_03980_v3 Cicer arietinum L. HOM05D000718 ORTHO05D002712 4.5e-21 104.4 77 67.5
PSO170G1468 Papaver somniferum HOM05D000718 ORTHO05D002712 4.5e-21 104.4 77 67.5
COL.COLO4_17553 Corchorus olitorius HOM05D000718 ORTHO05D003905 5.8e-21 104.0 77 66.2
TAR629G0962 Trochodendron aralioides HOM05D000718 ORTHO05D002712 5.8e-21 104.0 77 68.8
Glyma.12G229700 Glycine max HOM05D000718 ORTHO05D002712 7.6e-21 103.6 77 67.5
Hma1.2p1_0290F.1_g114780 Hydrangea macrophylla HOM05D000718 ORTHO05D002712 7.6e-21 103.6 77 67.5
Nitab4.5_0000383g0140 Nicotiana tabacum HOM05D000718 ORTHO05D002712 7.6e-21 103.6 77 67.5
Thecc.07G110600 Theobroma cacao HOM05D000718 ORTHO05D002712 7.6e-21 103.6 77 66.2
ECA236G1192 Erigeron canadensis HOM05D000718 ORTHO05D002712 1.0e-20 103.2 77 66.2
Lj1C830G9 Lonicera japonica HOM05D000718 ORTHO05D002712 1.0e-20 103.2 77 67.5
Lj2g0023746 Lotus japonicus HOM05D000718 ORTHO05D002712 1.0e-20 103.2 77 66.2
PGSC0003DMG402021263 Solanum tuberosum HOM05D000718 ORTHO05D002712 1.0e-20 103.2 77 66.2
Gohir.D05G341200 Gossypium hirsutum HOM05D000718 ORTHO05D002712 1.3e-20 102.8 77 67.5
Prupe.4G165200 Prunus persica HOM05D000718 ORTHO05D002712 1.3e-20 102.8 77 66.2
arahy.Tifrunner.gnm1.ann1.3QD2VV Arachis hypogaea HOM05D000718 ORTHO05D002712 1.7e-20 102.4 77 67.5
arahy.Tifrunner.gnm1.ann1.S2XJM8 Arachis hypogaea HOM05D000718 ORTHO05D002712 1.7e-20 102.4 77 67.5
CSS0004968 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D002712 1.7e-20 102.4 77 64.9
MBI06_g29323_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D002712 1.7e-20 102.4 77 66.2
Solyc10g007320.3 Solanum lycopersicum HOM05D000718 ORTHO05D002712 1.7e-20 102.4 77 66.2
Sopen10g003130 Solanum pennellii HOM05D000718 ORTHO05D002712 1.7e-20 102.4 77 66.2
Aqoxy5G04048 Aquilegia oxysepala HOM05D000718 ORTHO05D002712 2.2e-20 102.1 77 66.2
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 2.2e-20 102.1 77 64.9
CAN.G1119.3 Capsicum annuum HOM05D000718 ORTHO05D002712 2.2e-20 102.1 77 64.9
Lj5g0016080 Lotus japonicus HOM05D000718 ORTHO05D002712 2.2e-20 102.1 77 64.9
Peaxi162Scf00252g00416 Petunia axillaris HOM05D000718 ORTHO05D002712 2.2e-20 102.1 77 66.2
Peaxi162Scf00692g00610 Petunia axillaris HOM05D000718 ORTHO05D002712 2.2e-20 102.1 77 66.2
MD03G1242800 Malus domestica HOM05D000718 ORTHO05D002712 2.9e-20 101.7 77 66.2
arahy.Tifrunner.gnm1.ann1.A9E66P Arachis hypogaea HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 66.2
MSTRG.14231 Avicennia marina HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 66.2
CANSAT35G0570 Cannabis sativa HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 63.6
CDE02G4266 Ceratophyllum demersum HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 66.2
CDE09G1214 Ceratophyllum demersum HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 66.2
Gohir.A01G055100 Gossypium hirsutum HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 66.2
MD11G1263300 Malus domestica HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 66.2
Oeu061357.2 Olea europaea HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 64.9
vmacro11935 Vaccinium macrocarpon HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 64.9
vmacro23382 Vaccinium macrocarpon HOM05D000718 ORTHO05D002712 3.8e-20 101.3 77 64.9
ATR1131G065 Amborella trichopoda HOM05D000718 ORTHO05D002712 4.9e-20 100.9 77 66.2
Phvul.005G065500 Phaseolus vulgaris HOM05D000718 ORTHO05D002712 4.9e-20 100.9 77 63.6
VMungo1080G1900 Vigna mungo HOM05D000718 ORTHO05D002712 4.9e-20 100.9 77 63.6
AUR62027453 Chenopodium quinoa HOM05D000718 ORTHO05D002712 6.5e-20 100.5 77 64.9
Migut.H01995 Erythranthe guttata HOM05D000718 ORTHO05D002712 6.5e-20 100.5 77 64.9
unitig_749.g13540 Utricularia gibba HOM05D000718 ORTHO05D002712 6.5e-20 100.5 77 64.9
Actinidia12576 Actinidia chinensis HOM05D000718 ORTHO05D002712 8.4e-20 100.1 77 63.6
DCAR_021024 Daucus carota HOM05D000718 ORTHO05D002712 8.4e-20 100.1 77 66.2
Glyma.13G269900 Glycine max HOM05D000718 ORTHO05D002712 8.4e-20 100.1 77 64.9
TPR.G13952 Trifolium pratense HOM05D000718 ORTHO05D002712 8.4e-20 100.1 77 64.9
arahy.Tifrunner.gnm1.ann1.S4U7QR Arachis hypogaea HOM05D000718 ORTHO05D002712 1.1e-19 99.8 77 66.2
MELO3C016131.2 Cucumis melo HOM05D000718 ORTHO05D002712 1.1e-19 99.8 77 63.6
FAN11G2178 Fragaria x ananassa HOM05D000718 ORTHO05D002712 1.1e-19 99.8 77 64.9
FAN16G3513 Fragaria x ananassa HOM05D000718 ORTHO05D002712 1.1e-19 99.8 77 64.9
RcHm_v2.0_Chr5g0030981 Rosa chinensis HOM05D000718 ORTHO05D002712 1.1e-19 99.8 77 64.9
Cc05_g11120 Coffea canephora HOM05D000718 ORTHO05D002712 1.4e-19 99.4 77 63.6
Lsat_1_v5_gn_7_73881 Lactuca sativa HOM05D000718 ORTHO05D002712 1.4e-19 99.4 77 63.6
Rhsim06G0207600 Rhododendron simsii HOM05D000718 ORTHO05D002712 1.4e-19 99.4 77 62.3
ClCG07G010290 Citrullus lanatus HOM05D000718 ORTHO05D002712 1.9e-19 99.0 77 62.3
FvH4_3g18330 Fragaria vesca HOM05D000718 ORTHO05D002712 1.9e-19 99.0 77 64.9
FAN25G2426 Fragaria x ananassa HOM05D000718 ORTHO05D002712 1.9e-19 99.0 77 63.6
Manes.03G101500 Manihot esculenta HOM05D000718 ORTHO05D002712 1.9e-19 99.0 77 64.9
QL08p000399 Quercus lobata HOM05D000718 ORTHO05D002712 1.9e-19 99.0 77 64.9
C07p45170 Brassica napus HOM05D000718 ORTHO05D014279 2.5e-19 98.6 82 63.4
GSVIVG01014200001 Vitis vinifera HOM05D000718 ORTHO05D002712 2.5e-19 98.6 77 64.9
Hund10558 Selenicereus undatus HOM05D000718 ORTHO05D002712 3.2e-19 98.2 77 59.7
HPP92_008795 Vanilla planifolia HOM05D000718 ORTHO05D002712 3.2e-19 98.2 77 62.3
Eucgr.F01239 Eucalyptus grandis HOM05D000718 ORTHO05D002712 4.2e-19 97.8 77 64.9
Medtr2g076340 Medicago truncatula HOM05D000718 ORTHO05D002712 4.2e-19 97.8 77 63.6
Lalb_Chr25g0285891 Lupinus albus HOM05D000718 ORTHO05D002712 5.5e-19 97.4 77 62.3
arahy.Tifrunner.gnm1.ann1.M2Z725 Arachis hypogaea HOM05D000718 ORTHO05D002712 7.1e-19 97.1 77 63.6
CsaV3_4G008050 Cucumis sativus L. HOM05D000718 ORTHO05D002712 7.1e-19 97.1 77 61.0
FAN21G1491 Fragaria x ananassa HOM05D000718 ORTHO05D002712 7.1e-19 97.1 77 63.6
arahy.Tifrunner.gnm1.ann1.Q1NN8R Arachis hypogaea HOM05D000718 ORTHO05D002712 9.3e-19 96.7 77 63.6
EL10Ac4g08341 Beta vulgaris HOM05D000718 ORTHO05D002712 9.3e-19 96.7 77 63.6
TWI38G2127 Tripterygium wilfordii HOM05D000718 ORTHO05D002712 9.3e-19 96.7 77 62.3
AUR62026397 Chenopodium quinoa HOM05D000718 ORTHO05D002712 2.7e-18 95.1 78 64.1
Sed0009887 Sechium edule HOM05D000718 ORTHO05D002712 2.7e-18 95.1 77 61.0
Ah.14g085480 Amaranthus hybridus HOM05D000718 ORTHO05D002712 3.5e-18 94.7 77 62.3
PGR102G0111 Punica granatum HOM05D000718 ORTHO05D002712 4.6e-18 94.4 77 59.7
Sc16g0007550 Simmondsia chinensis HOM05D000718 ORTHO05D002712 4.6e-18 94.4 77 61.0
Psat0s911g0080 Pisum sativum HOM05D000718 ORTHO05D002712 1.0e-17 93.2 77 61.0
arahy.Tifrunner.gnm1.ann1.IT467D Arachis hypogaea HOM05D000718 ORTHO05D002712 8.7e-17 90.1 77 59.7
Os01g0622300 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D002712 1.5e-16 89.4 77 55.8
Pp3c18_16840 Physcomitrium patens HOM05D000718 ORTHO05D002712 7.4e-16 87.0 77 53.2
Zm00001eb358460 Zea mays HOM05D000718 ORTHO05D002712 7.4e-16 87.0 77 54.5
Zm00001eb358500 Zea mays HOM05D000718 ORTHO05D002712 7.4e-16 87.0 77 54.5
CBR_g41405 Chara braunii HOM05D000718 ORTHO05D002712 2.8e-15 85.1 75 52.0
CiPaw.12G113500 Carya illinoinensis HOM05D000718 ORTHO05D003905 3.1e-14 81.6 74 56.8
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 4.1e-14 81.3 77 53.2
SGA_v2.0_scaffold34G13886 Striga asiatica HOM05D000718 ORTHO05D002712 6.9e-14 80.5 59 64.4
SMO147G0075 Selaginella moellendorffii HOM05D000718 ORTHO05D002712 1.5e-13 79.3 77 51.9
MCO04G531 Micromonas commoda HOM05D000718 ORTHO05D002712 2.0e-13 79.0 77 49.4
SalBow7G2456 Salvia bowleyana HOM05D000718 ORTHO05D002712 3.4e-13 78.2 61 65.6
AUR62031246 Chenopodium quinoa HOM05D000718 ORTHO05D002712 5.9e-13 77.4 61 65.6
C02p50010 Brassica napus HOM05D000718 ORTHO05D027315 2.9e-12 75.1 73 56.2
Cre02.g076300 Chlamydomonas reinhardtii HOM05D000718 ORTHO05D002712 2.9e-12 75.1 77 49.4
Actinidia09809 Actinidia chinensis HOM05D000718 ORTHO05D002712 3.8e-12 74.7 71 54.9
SEGI_21138 Sequoiadendron giganteum HOM05D000718 ORTHO05D002712 8.5e-12 73.6 61 60.7
TAR636G2811 Trochodendron aralioides HOM05D000718 ORTHO05D002712 4.2e-11 71.2 75 54.7
Atru.chr4.2167 Acer truncatum HOM05D000718 ORTHO05D014279 2.1e-10 68.9 45 71.1
ATR0585G075 Amborella trichopoda HOM05D000718 ORTHO05D002712 2.7e-10 68.6 60 58.3
arahy.Tifrunner.gnm1.ann1.58I10M Arachis hypogaea HOM05D000718 ORTHO05D002712 4.6e-10 67.8 54 61.1
arahy.Tifrunner.gnm1.ann1.EI43SS Arachis hypogaea HOM05D000718 ORTHO05D002712 3.0e-09 65.1 53 60.4
arahy.Tifrunner.gnm1.ann1.T5TV0P Arachis hypogaea HOM05D000718 ORTHO05D002712 1.9e-08 62.4 50 62.0
Mapoly0015s0009 Marchantia polymorpha HOM05D000718 ORTHO05D002712 4.3e-08 61.2 79 41.8
MCO01G408 Micromonas commoda HOM05D000718 ORTHO05D002712 1.3e-07 59.7 79 41.8
HPP92_019063 Vanilla planifolia HOM05D000718 ORTHO05D002712 1.3e-07 59.7 78 44.9
MCO01G506 Micromonas commoda HOM05D000718 ORTHO05D002712 2.8e-07 58.5 78 43.6
Pp3c13_10750 Physcomitrium patens HOM05D000718 ORTHO05D002712 2.8e-07 58.5 79 40.5
CDE12G0570 Ceratophyllum demersum HOM05D000718 ORTHO05D002712 4.8e-07 57.8 80 45.0
Eucgr.G03125 Eucalyptus grandis HOM05D000718 ORTHO05D002712 6.3e-07 57.4 80 42.5
MBI15_g22072_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D002712 8.2e-07 57.0 80 42.5
ATR0681G070 Amborella trichopoda HOM05D000718 ORTHO05D002712 1.1e-06 56.6 80 43.8
PRCOL_00002063 Prasinoderma coloniale HOM05D000718 ORTHO05D002712 1.1e-06 56.6 87 40.2
Zm00001eb016170 Zea mays HOM05D000718 ORTHO05D002712 1.1e-06 56.6 78 42.3
Sabra19G0058400 Salix brachista HOM05D000718 ORTHO05D002712 1.4e-06 56.2 78 42.3
FvH4_7g25624 Fragaria vesca HOM05D000718 ORTHO05D002712 2.4e-06 55.5 78 39.7
FAN06G2707 Fragaria x ananassa HOM05D000718 ORTHO05D002712 2.4e-06 55.5 78 39.7
PRCOL_00001428 Prasinoderma coloniale HOM05D000718 ORTHO05D002712 2.4e-06 55.5 78 39.7
BcaC07g39394 Brassica carinata HOM05D000718 ORTHO05D027315 3.1e-06 55.1 36 75.0
MSTRG.8367 Avicennia marina HOM05D000718 ORTHO05D002712 4.1e-06 54.7 80 43.8
Manes.10G005300 Manihot esculenta HOM05D000718 ORTHO05D002712 4.1e-06 54.7 80 42.5
Nn2g10359 Nelumbo nucifera HOM05D000718 ORTHO05D002712 4.1e-06 54.7 78 41.0
Potri.019G048900 Populus trichocarpa HOM05D000718 ORTHO05D002712 4.1e-06 54.7 78 39.7
DCAR_024057 Daucus carota HOM05D000718 ORTHO05D002712 5.3e-06 54.3 80 42.5
MD01G1163500 Malus domestica HOM05D000718 ORTHO05D002712 5.3e-06 54.3 80 41.2
Os03g0337600 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D002712 5.3e-06 54.3 78 41.0
CANSAT56G0708 Cannabis sativa HOM05D000718 ORTHO05D002712 6.9e-06 53.9 78 39.7
FAN01G1214 Fragaria x ananassa HOM05D000718 ORTHO05D002712 6.9e-06 53.9 78 39.7
FAN03G3360 Fragaria x ananassa HOM05D000718 ORTHO05D002712 6.9e-06 53.9 78 39.7
FAN06G4082 Fragaria x ananassa HOM05D000718 ORTHO05D002712 6.9e-06 53.9 78 39.7
FAN10G0473 Fragaria x ananassa HOM05D000718 ORTHO05D002712 6.9e-06 53.9 78 41.0
Lsat_1_v5_gn_2_125401 Lactuca sativa HOM05D000718 ORTHO05D002712 6.9e-06 53.9 80 42.5
Psat5g131600 Pisum sativum HOM05D000718 ORTHO05D002712 6.9e-06 53.9 80 41.2
SGA_v2.0_scaffold282G46942 Striga asiatica HOM05D000718 ORTHO05D002712 6.9e-06 53.9 80 42.5
Glyma.11G235400 Glycine max HOM05D000718 ORTHO05D002712 9.1e-06 53.5 80 42.5
Phvul.001G248800 Phaseolus vulgaris HOM05D000718 ORTHO05D002712 9.1e-06 53.5 78 39.7
TWI73G0340 Tripterygium wilfordii HOM05D000718 ORTHO05D002712 9.1e-06 53.5 80 41.2


User provided reference genes

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