Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p68350 Brassica napus HOM05D013087 ORTHO05D019995 9.1e-56 219.9 106 100.0
BolC3t19066H Brassica oleracea HOM05D013087 ORTHO05D019995 4.0e-51 204.5 99 100.0
C09p21440 Brassica napus HOM05D013087 ORTHO05D019995 1.8e-48 195.7 106 92.5
BolC2t08495H Brassica oleracea HOM05D013087 ORTHO05D019995 1.0e-35 153.3 85 90.6
BolC9t55028H Brassica oleracea HOM05D013087 ORTHO05D019995 3.7e-33 144.8 72 95.8
A03p52030 Brassica napus HOM05D013087 ORTHO05D019995 2.7e-31 138.7 97 72.2
BolC8t51399H Brassica oleracea HOM05D013087 ORTHO05D042125 4.3e-21 104.8 86 66.3
BcaB05g22390 Brassica carinata HOM05D000344 ORTHO05D005296 4.4e-18 94.7 65 73.8
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 1.3e-17 93.2 65 72.3
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 1.3e-17 93.2 65 72.3
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 2.2e-17 92.4 65 70.8
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 2.9e-17 92.0 65 70.8
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 2.9e-17 92.0 65 70.8
A02p08070 Brassica napus HOM05D000344 ORTHO05D005296 6.4e-17 90.9 65 69.2
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 6.4e-17 90.9 65 69.2
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 6.4e-17 90.9 65 69.2
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 6.4e-17 90.9 65 69.2
BcaNung07256 Brassica carinata HOM05D000344 ORTHO05D005296 1.9e-16 89.4 65 69.2
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 2.4e-16 89.0 65 69.2
A10p16190 Brassica napus HOM05D000344 ORTHO05D005296 1.2e-15 86.7 65 67.7
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 1.2e-15 86.7 66 66.7
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 1.2e-15 86.7 65 67.7
C09p49800 Brassica napus HOM05D000344 ORTHO05D005296 1.6e-15 86.3 65 67.7
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 1.6e-15 86.3 65 67.7
BraA10t43610Z Brassica rapa HOM05D000344 ORTHO05D005296 1.6e-15 86.3 65 67.7
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 1.6e-15 86.3 65 67.7
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 2.7e-15 85.5 65 67.7
BcaC04g22282 Brassica carinata HOM05D013087 ORTHO05D019995 3.9e-14 81.6 81 60.5
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 5.1e-14 81.3 65 66.2
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 6.6e-14 80.9 65 63.1
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 1.1e-13 80.1 65 64.6
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 1.5e-13 79.7 65 64.6
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 1.9e-13 79.3 65 63.1
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 1.9e-13 79.3 65 63.1
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 4.3e-13 78.2 65 61.5
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 5.6e-13 77.8 65 61.5
Sed0023248 Sechium edule HOM05D000344 ORTHO05D005296 5.6e-13 77.8 65 61.5
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 7.3e-13 77.4 65 60.0
CiPaw.15G176800 Carya illinoinensis HOM05D000344 ORTHO05D005296 7.3e-13 77.4 66 59.1
EL10Ac7g17422 Beta vulgaris HOM05D000344 ORTHO05D005296 9.5e-13 77.0 65 61.5
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 9.5e-13 77.0 65 61.5
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 9.5e-13 77.0 65 61.5
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 9.5e-13 77.0 65 61.5
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 1.2e-12 76.6 66 57.6
GSVIVG01001912001 Vitis vinifera HOM05D000344 ORTHO05D005296 1.2e-12 76.6 65 60.0
Carub.0008s1852 Capsella rubella HOM05D000344 ORTHO05D005296 1.6e-12 76.3 65 61.5
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 1.6e-12 76.3 65 61.5
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 2.1e-12 75.9 66 57.6
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 2.1e-12 75.9 66 57.6
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 2.1e-12 75.9 65 58.5
Cpa.g.sc46.148 Carica papaya HOM05D000344 ORTHO05D005296 3.6e-12 75.1 64 60.9
Glyma.02G203500 Glycine max HOM05D000344 ORTHO05D005296 3.6e-12 75.1 65 60.0
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 3.6e-12 75.1 66 57.6
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 3.6e-12 75.1 66 57.6
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 3.6e-12 75.1 66 57.6
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 3.6e-12 75.1 65 60.0
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 4.7e-12 74.7 65 58.5
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 4.7e-12 74.7 65 60.0
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 4.7e-12 74.7 65 60.0
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 6.2e-12 74.3 65 58.5
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 8.1e-12 73.9 66 59.1
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 8.1e-12 73.9 65 60.0
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 8.1e-12 73.9 66 57.6
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 1.1e-11 73.6 65 58.5
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 1.1e-11 73.6 65 58.5
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 1.1e-11 73.6 65 58.5
C08p38240 Brassica napus HOM05D013087 ORTHO05D042125 1.4e-11 73.2 86 51.2
Dinv41384 Davidia involucrata HOM05D000344 ORTHO05D005296 1.4e-11 73.2 65 58.5
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 1.4e-11 73.2 65 55.4
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 1.4e-11 73.2 65 55.4
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 1.4e-11 73.2 65 58.5
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 1.4e-11 73.2 65 58.5
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 1.4e-11 73.2 65 58.5
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 1.4e-11 73.2 65 58.5
TAR636G0133 Trochodendron aralioides HOM05D000344 ORTHO05D005296 1.4e-11 73.2 65 56.9
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 1.8e-11 72.8 65 58.5
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 2.3e-11 72.4 66 57.6
Hma1.2p1_0222F.1_g093480 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 2.3e-11 72.4 65 58.5
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 2.3e-11 72.4 65 58.5
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 2.3e-11 72.4 65 58.5
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 2.3e-11 72.4 65 55.4
PSO732G0388 Papaver somniferum HOM05D000344 ORTHO05D005296 2.3e-11 72.4 65 55.4
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 2.3e-11 72.4 65 58.5
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 2.3e-11 72.4 65 58.5
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 2.3e-11 72.4 65 58.5
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 2.3e-11 72.4 65 58.5
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 3.1e-11 72.0 65 56.9
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 3.1e-11 72.0 65 56.9
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 3.1e-11 72.0 66 54.5
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 3.1e-11 72.0 65 58.5
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 4.0e-11 71.6 66 56.1
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 4.0e-11 71.6 65 58.5
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 4.0e-11 71.6 65 56.9
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 4.0e-11 71.6 65 56.9
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 5.2e-11 71.2 66 54.5
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 5.2e-11 71.2 65 56.9
Lj9A682T45 Lonicera japonica HOM05D000344 ORTHO05D014129 5.2e-11 71.2 65 58.5
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 5.2e-11 71.2 65 58.5
Nn2g12347 Nelumbo nucifera HOM05D000344 ORTHO05D005296 5.2e-11 71.2 65 56.9
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 5.2e-11 71.2 65 56.9
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 6.8e-11 70.9 66 53.0
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 6.8e-11 70.9 65 56.9
GSVIVG01014079001 Vitis vinifera HOM05D000344 ORTHO05D005296 6.8e-11 70.9 65 55.4
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 8.9e-11 70.5 65 56.9
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 8.9e-11 70.5 65 56.9
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 1.2e-10 70.1 65 56.9
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 1.5e-10 69.7 65 61.5
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 1.5e-10 69.7 65 61.5
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 1.5e-10 69.7 65 56.9
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 1.5e-10 69.7 75 52.0
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 1.5e-10 69.7 65 53.8
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 1.5e-10 69.7 67 58.2
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 2.0e-10 69.3 65 56.9
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 2.0e-10 69.3 66 53.0
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 2.0e-10 69.3 65 52.3
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 3.4e-10 68.6 65 55.4
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 3.4e-10 68.6 65 55.4
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 4.4e-10 68.2 65 56.9
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 4.4e-10 68.2 65 52.3
ECA234G2365 Erigeron canadensis HOM05D000344 ORTHO05D004969 5.8e-10 67.8 65 56.9
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 5.8e-10 67.8 65 53.8
SEGI_17191 Sequoiadendron giganteum HOM05D000344 ORTHO05D005296 7.6e-10 67.4 66 53.0
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 1.3e-09 66.6 67 55.2
Mapoly0004s0060 Marchantia polymorpha HOM05D000344 ORTHO05D005296 3.8e-09 65.1 66 51.5
SEGI_32126 Sequoiadendron giganteum HOM05D000344 ORTHO05D005296 3.8e-09 65.1 67 50.7
HPP92_010385 Vanilla planifolia HOM05D000344 ORTHO05D005296 4.9e-09 64.7 65 50.8
Pp3c7_9250 Physcomitrium patens HOM05D000344 ORTHO05D005296 1.1e-08 63.5 67 55.2
SMO351G0076 Selaginella moellendorffii HOM05D000344 ORTHO05D005296 1.4e-08 63.2 74 50.0
AagrBONN_evm.TU.Sc2ySwM_228.782 Anthoceros agrestis HOM05D000344 ORTHO05D005296 1.9e-08 62.8 103 39.8
BolC3t19603H Brassica oleracea HOM05D000152 ORTHO05D000609 3.2e-08 62.0 89 47.2
SEGI_20474 Sequoiadendron giganteum HOM05D000344 ORTHO05D003292 2.1e-07 59.3 65 46.2
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 2.7e-07 58.9 68 50.0
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 2.7e-07 58.9 68 50.0
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 2.7e-07 58.9 68 50.0
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 2.7e-07 58.9 68 50.0
CBR_g10897 Chara braunii HOM05D000344 ORTHO05D005296 3.9e-06 55.1 68 48.5


User provided reference genes

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