Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 6.1e-82 307.4 149 100.0
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 3.8e-68 261.5 158 84.2
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.6e-61 239.6 116 99.1
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 9.6e-27 124.0 171 44.4
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 9.6e-27 124.0 171 44.4
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 6.2e-26 121.3 149 49.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 8.1e-26 120.9 171 44.4
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.1e-25 120.6 146 48.6
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.8e-25 119.8 171 44.4
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 3.1e-25 119.0 166 44.6
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 3.1e-25 119.0 166 44.6
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 3.1e-25 119.0 166 44.6
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 4.0e-25 118.6 166 44.6
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 9.0e-25 117.5 171 43.9
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.5e-24 116.7 171 43.9
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 7.6e-24 114.4 166 42.8
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 3.8e-23 112.1 173 41.0
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 6.4e-23 111.3 153 43.1
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 6.4e-23 111.3 173 40.5
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.9e-22 109.8 154 42.9
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 2.4e-22 109.4 173 39.9
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 7.1e-22 107.8 146 41.8
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 1.2e-21 107.1 143 44.1
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.7e-21 105.9 146 42.5
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 4.6e-21 105.1 146 41.1
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 4.6e-21 105.1 146 41.1
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 6.0e-21 104.8 137 46.7
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 6.0e-21 104.8 137 46.7
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 7.8e-21 104.4 146 41.1
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.0e-20 104.0 149 40.3
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.0e-20 104.0 146 41.8
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 1.3e-20 103.6 146 39.7
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 1.3e-20 103.6 153 38.6
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 1.3e-20 103.6 166 36.7
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 1.3e-20 103.6 146 41.1
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.7e-20 103.2 143 42.7
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.7e-20 103.2 173 37.6
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.3e-20 102.8 146 40.4
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 3.0e-20 102.4 146 41.8
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 3.0e-20 102.4 157 39.5
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 3.0e-20 102.4 146 40.4
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 8.7e-20 100.9 146 39.7
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 8.7e-20 100.9 142 42.3
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.1e-19 100.5 146 39.0
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.1e-19 100.5 146 39.0
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.1e-19 100.5 142 41.5
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 1.5e-19 100.1 155 42.6
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 1.9e-19 99.8 173 37.0
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.9e-19 99.8 143 39.9
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.9e-19 99.8 146 39.7
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 2.5e-19 99.4 146 39.7
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.5e-19 99.4 146 39.0
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.5e-19 99.4 146 39.0
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 2.5e-19 99.4 146 39.7
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 3.3e-19 99.0 157 40.1
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 4.3e-19 98.6 157 39.5
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 4.3e-19 98.6 142 38.7
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 4.3e-19 98.6 146 39.0
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 5.6e-19 98.2 146 39.0
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 9.6e-19 97.4 146 38.4
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 9.6e-19 97.4 157 36.9
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 9.6e-19 97.4 154 37.0
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.3e-18 97.1 142 37.3
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 1.3e-18 97.1 157 38.2
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.3e-18 97.1 143 39.2
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.6e-18 96.7 149 37.6
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 1.6e-18 96.7 148 39.2
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.6e-18 96.7 142 40.1
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.6e-18 96.7 143 39.2
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 2.1e-18 96.3 146 38.4
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 2.1e-18 96.3 154 36.4
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.6e-18 95.5 146 37.7
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 4.8e-18 95.1 146 38.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 4.8e-18 95.1 147 40.1
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 6.2e-18 94.7 146 38.4
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 8.1e-18 94.4 142 38.7
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 8.1e-18 94.4 157 37.6
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 1.1e-17 94.0 154 35.1
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 1.1e-17 94.0 112 47.3
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.4e-17 93.6 146 37.7
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.4e-17 93.6 146 37.7
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.8e-17 93.2 152 35.5
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 1.8e-17 93.2 146 37.0
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.8e-17 93.2 142 39.4
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.8e-17 93.2 142 37.3
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 2.4e-17 92.8 149 36.9
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 3.1e-17 92.4 153 36.6
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 3.1e-17 92.4 160 33.8
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 3.1e-17 92.4 153 35.9
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 4.0e-17 92.0 146 37.0
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 4.0e-17 92.0 146 37.0
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 4.0e-17 92.0 146 36.3
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 5.3e-17 91.7 142 35.9
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 5.3e-17 91.7 151 36.4
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 9.0e-17 90.9 153 35.3
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 9.0e-17 90.9 158 35.4
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.2e-16 90.5 146 37.0
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.2e-16 90.5 146 37.0
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.5e-16 90.1 142 36.6
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.5e-16 90.1 153 33.3
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 2.0e-16 89.7 153 35.3
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 2.6e-16 89.4 145 35.2
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 3.4e-16 89.0 151 34.4
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 9.9e-16 87.4 153 35.3
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 9.9e-16 87.4 142 34.5
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.3e-15 87.0 146 37.0
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 2.2e-15 86.3 151 33.1
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 6.4e-15 84.7 120 40.8
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.1e-14 84.0 113 42.5
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 9.3e-14 80.9 151 32.5
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 9.3e-14 80.9 145 33.1
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 1.2e-13 80.5 153 34.6
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 6.0e-13 78.2 140 35.0
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.0e-12 77.4 164 30.5
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.3e-12 77.0 56 67.9
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.7e-12 74.7 123 36.6
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 6.7e-12 74.7 139 37.4
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.1e-11 73.9 141 33.3
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 2.5e-11 72.8 132 32.6
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.3e-11 72.0 122 35.2
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 1.6e-10 70.1 132 33.3
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.1e-09 67.4 130 33.8
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 1.4e-09 67.0 146 32.9
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 9.0e-09 64.3 52 57.7
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 3.4e-08 62.4 125 32.0
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 2.2e-07 59.7 148 27.7
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 6.4e-07 58.2 44 59.1
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 7.1e-06 54.7 78 39.7


User provided reference genes

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