Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 4.1e-229 797.7 406 100.0
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 5.3e-229 797.3 405 100.0
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 4.5e-228 794.3 406 99.8
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.3e-222 776.2 405 96.3
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.1e-221 773.1 406 97.8
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 4.1e-221 771.2 405 97.5
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.5e-218 761.9 405 94.6
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 7.9e-217 756.9 405 93.6
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 6.7e-216 753.8 405 93.3
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 2.2e-214 748.8 405 92.6
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 6.3e-214 747.3 406 93.1
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 8.2e-214 746.9 406 94.3
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.2e-212 743.0 405 91.6
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.2e-209 733.0 406 91.9
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.2e-209 733.0 406 91.9
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.2e-209 733.0 406 91.9
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.0e-208 729.9 406 90.1
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.8e-208 729.2 407 91.6
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 7.4e-207 723.8 407 91.2
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 3.5e-196 688.3 407 83.8
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.4e-173 613.2 405 75.8
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 5.4e-173 611.3 401 74.3
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 5.6e-170 601.3 405 73.1
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 9.5e-170 600.5 404 72.3
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.2e-169 600.1 404 72.8
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.6e-169 599.7 391 74.7
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.8e-169 599.0 391 74.4
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.8e-169 599.0 403 73.0
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.0e-169 597.4 391 73.9
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 1.8e-168 596.3 402 73.1
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 2.3e-168 595.9 408 73.5
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 3.1e-168 595.5 402 72.4
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.1e-168 595.5 389 74.6
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 4.0e-168 595.1 389 74.6
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 5.2e-168 594.7 408 71.3
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 8.9e-168 594.0 403 72.2
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 8.9e-168 594.0 408 72.8
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 8.9e-168 594.0 403 72.2
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.5e-167 593.2 389 74.3
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.5e-167 593.2 402 73.4
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 2.0e-167 592.8 411 70.8
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 7.5e-167 590.9 402 73.4
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 7.5e-167 590.9 394 72.3
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.9e-166 589.0 401 72.1
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 3.7e-166 588.6 408 71.6
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 4.9e-166 588.2 394 74.1
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.2e-165 585.5 401 71.8
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.2e-165 585.5 394 74.1
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 7.0e-165 584.3 404 70.8
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 9.2e-165 583.9 401 71.3
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.0e-164 582.8 394 73.6
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 2.7e-164 582.4 394 72.3
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.6e-164 581.6 394 73.4
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.8e-164 580.9 394 73.4
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 7.8e-164 580.9 394 71.8
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.3e-163 580.1 394 73.4
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 2.3e-163 579.3 393 73.8
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 3.9e-163 578.6 397 70.0
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 6.6e-163 577.8 394 73.1
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 1.5e-162 576.6 393 72.8
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.9e-162 576.2 402 70.1
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.9e-162 576.2 404 71.8
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.3e-162 575.1 394 71.6
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 5.6e-162 574.7 402 70.1
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 7.3e-162 574.3 394 71.6
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 9.5e-162 573.9 402 70.9
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.2e-161 573.5 401 70.1
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.6e-161 573.2 401 70.3
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.1e-161 572.8 401 71.1
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.8e-161 572.4 402 70.6
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 6.2e-161 571.2 392 71.4
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 8.1e-161 570.9 408 69.1
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 2.3e-160 569.3 471 62.0
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.3e-160 569.3 401 70.1
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.0e-160 568.5 393 72.0
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 6.8e-160 567.8 399 68.4
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.2e-159 567.0 395 70.9
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 1.5e-159 566.6 394 70.6
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 2.6e-159 565.8 394 69.8
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 2.6e-159 565.8 394 70.6
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 4.4e-159 565.1 398 69.6
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.7e-158 563.1 404 69.8
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 2.2e-158 562.8 402 69.9
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 2.2e-158 562.8 393 71.8
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.2e-158 562.8 404 69.8
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 2.9e-158 562.4 394 70.1
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.9e-158 561.6 412 68.4
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 6.4e-158 561.2 406 68.2
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.1e-157 560.5 401 68.3
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.1e-157 560.5 409 68.5
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.1e-157 560.5 406 69.0
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 1.4e-157 560.1 406 68.7
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.4e-157 560.1 400 70.5
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-157 559.7 387 72.1
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-157 559.7 401 70.1
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-157 559.7 392 71.9
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.2e-157 558.9 402 70.1
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 7.1e-157 557.8 422 66.4
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 9.2e-157 557.4 397 69.3
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.1e-156 556.2 397 69.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.1e-156 556.2 399 69.2
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 6.0e-156 554.7 400 68.2
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 6.0e-156 554.7 436 64.9
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 3.9e-155 552.0 408 66.7
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 5.1e-155 551.6 395 68.6
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 6.6e-155 551.2 391 69.3
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.1e-154 550.4 401 67.6
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.5e-154 549.3 408 66.4
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.3e-154 548.9 441 63.9
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.3e-154 548.5 396 68.2
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.1e-153 546.2 394 69.3
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.1e-152 543.9 409 66.7
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 4.9e-150 535.0 407 66.6
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 8.4e-150 534.3 402 68.4
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 8.4e-150 534.3 457 61.9
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.4e-149 533.5 430 64.0
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 3.5e-148 528.9 390 66.7
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.3e-147 526.9 362 71.5
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.4e-144 516.2 388 65.2
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 5.2e-144 515.0 403 64.3
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 4.9e-142 508.4 389 63.8
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.9e-138 496.5 470 57.9
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.9e-138 496.5 411 60.8
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 9.3e-133 477.6 391 62.4
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 4.3e-130 468.8 395 60.3
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 4.8e-129 465.3 399 59.6
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.1e-128 464.2 401 57.4
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 9.9e-127 457.6 384 59.9
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.2e-124 450.7 327 69.1
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 6.0e-124 448.4 285 75.4
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.1e-112 411.0 317 65.6
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 3.1e-112 409.5 309 67.6
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 7.9e-100 368.2 219 81.3
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 3.1e-96 356.3 388 47.4
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 5.3e-96 355.5 371 49.3
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.1e-88 329.3 199 79.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 2.0e-79 300.4 195 72.8
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 8.9e-59 231.9 194 60.8
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.2e-44 184.9 111 78.4
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 5.8e-42 176.0 117 70.9
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 2.7e-23 114.0 94 60.6
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.5e-21 108.2 71 66.2
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 4.3e-21 106.7 83 62.7
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 2.1e-20 104.4 93 54.8
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 9.9e-18 95.5 79 57.0
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 2.4e-16 90.9 83 56.6
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.5e-07 60.5 38 76.3
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.3e-06 58.5 222 26.1


User provided reference genes

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