Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 8.8e-171 603.6 319 100.0
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 3.4e-170 601.7 319 99.7
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 4.2e-165 584.7 313 98.7
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 4.0e-155 551.6 312 93.9
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 1.2e-154 550.1 312 93.9
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 5.0e-150 534.6 310 91.6
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 4.3e-141 505.0 312 86.2
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 4.1e-128 461.8 308 80.2
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 4.7e-124 448.4 313 77.3
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 4.7e-124 448.4 315 77.5
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.4e-123 446.0 313 78.6
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 6.8e-123 444.5 312 76.3
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 3.4e-122 442.2 312 76.6
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 1.6e-108 396.7 315 69.2
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 5.8e-98 361.7 315 64.8
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 3.4e-90 335.9 286 64.0
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 2.2e-65 253.4 254 59.8
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 2.7e-63 246.5 290 47.9
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 1.4e-62 244.2 256 58.6
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 5.2e-62 242.3 337 41.2
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 6.7e-62 241.9 337 42.4
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 8.8e-62 241.5 311 43.4
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 1.1e-61 241.1 329 43.2
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 9.7e-61 238.0 301 43.5
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.3e-60 237.7 296 45.6
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.8e-60 236.5 309 45.0
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 8.2e-60 235.0 288 46.9
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 1.1e-59 234.6 311 46.9
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.4e-59 234.2 285 46.0
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.8e-59 233.8 296 44.9
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 2.4e-59 233.4 310 42.3
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 5.3e-59 232.3 300 44.7
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.6e-58 230.7 296 44.3
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 2.7e-58 229.9 293 44.4
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 4.5e-58 229.2 304 42.8
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 5.9e-58 228.8 314 41.7
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 5.9e-58 228.8 292 44.5
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.0e-57 228.0 302 43.7
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.3e-57 227.6 274 46.4
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 8.5e-57 224.9 312 41.7
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.1e-56 224.6 296 45.3
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.5e-56 224.2 308 42.2
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 1.5e-56 224.2 311 45.0
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.9e-56 223.8 314 42.0
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 3.2e-56 223.0 309 42.1
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 4.2e-56 222.6 312 42.3
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 5.5e-56 222.2 260 45.4
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 1.6e-55 220.7 310 41.3
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 2.1e-55 220.3 314 41.4
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 4.7e-55 219.2 277 45.5
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 4.7e-55 219.2 308 41.9
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 8.0e-55 218.4 307 41.0
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 8.0e-55 218.4 346 38.2
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.0e-54 218.0 301 42.5
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 1.0e-54 218.0 300 44.0
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.0e-54 218.0 310 40.6
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.4e-54 217.6 297 43.8
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.8e-54 217.2 297 41.8
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 2.3e-54 216.9 301 42.2
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 3.0e-54 216.5 304 40.8
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.0e-54 216.1 310 40.0
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 5.2e-54 215.7 304 43.8
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 8.8e-54 214.9 304 40.8
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.2e-53 214.5 292 42.1
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 9.8e-53 211.5 300 42.3
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 9.8e-53 211.5 291 43.0
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 1.3e-52 211.1 316 42.7
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.3e-52 211.1 312 42.0
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 1.3e-52 211.1 339 37.2
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 2.2e-52 210.3 308 41.6
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 2.8e-52 209.9 305 41.6
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 3.7e-52 209.5 309 43.0
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 6.3e-52 208.8 309 41.4
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 8.3e-52 208.4 304 39.5
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 8.3e-52 208.4 319 42.3
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 1.1e-51 208.0 273 43.6
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 1.4e-51 207.6 316 40.8
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 5.4e-51 205.7 309 39.8
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.4e-51 205.7 261 44.4
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 2.0e-50 203.8 302 40.7
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 4.5e-50 202.6 291 39.9
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 4.5e-50 202.6 304 40.5
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 5.9e-50 202.2 302 40.4
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.9e-50 202.2 261 44.1
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 1.0e-49 201.4 312 40.4
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 2.9e-49 199.9 313 37.4
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 5.0e-49 199.1 308 41.6
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 8.5e-49 198.4 296 39.2
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.1e-48 198.0 311 38.9
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 1.1e-48 198.0 293 42.3
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 1.5e-48 197.6 304 40.5
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.9e-48 197.2 313 40.9
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 2.5e-48 196.8 309 38.8
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 4.2e-48 196.1 295 40.7
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 9.4e-48 194.9 300 41.3
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 1.2e-47 194.5 334 37.4
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.2e-47 194.5 231 44.6
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 1.2e-47 194.5 321 37.7
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 2.7e-47 193.4 295 40.3
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 8.0e-47 191.8 227 43.6
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 8.0e-47 191.8 303 39.3
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.4e-46 191.0 255 41.2
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 2.3e-46 190.3 275 41.8
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 3.0e-46 189.9 303 37.3
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 8.8e-46 188.3 301 39.5
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 8.8e-46 188.3 309 38.5
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.0e-45 187.2 315 37.1
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 3.4e-45 186.4 340 35.3
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 4.4e-45 186.0 203 54.7
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.4e-45 186.0 309 37.9
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 9.8e-45 184.9 251 41.0
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 1.7e-44 184.1 188 59.0
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 2.2e-44 183.7 367 34.3
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 4.9e-44 182.6 248 44.8
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 3.1e-43 179.9 354 36.4
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 9.2e-43 178.3 231 41.6
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.2e-42 177.9 313 39.3
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 3.5e-42 176.4 293 38.6
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.9e-40 170.6 313 36.7
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 5.6e-40 169.1 292 38.0
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 2.9e-36 156.8 235 39.6
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 3.7e-36 156.4 237 39.2
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 1.6e-34 151.0 307 34.9
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.0e-33 148.3 304 35.2
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.7e-33 147.5 190 40.5
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.1e-32 144.8 310 34.2
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 4.7e-31 139.4 224 36.2
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 1.0e-30 138.3 194 38.7
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 4.0e-30 136.3 284 33.8
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 4.0e-30 136.3 254 35.0
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 2.0e-29 134.0 290 31.4
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 2.0e-29 134.0 217 36.4
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 9.8e-29 131.7 137 44.5
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.6e-26 124.4 307 31.9
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 2.0e-26 124.0 259 35.1
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.3e-25 120.6 216 35.2
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 5.0e-25 119.4 147 45.6
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.5e-24 117.9 303 29.0
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 3.3e-24 116.7 219 32.0
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 5.2e-22 109.4 261 29.9
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.9e-19 100.9 181 38.1
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 1.6e-15 87.8 136 37.5
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 1.6e-15 87.8 100 42.0
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 3.6e-15 86.7 199 29.1
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 4.7e-15 86.3 149 39.6
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.9e-12 77.0 236 30.5
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 4.1e-11 73.2 89 44.9
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 3.5e-10 70.1 119 33.6
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.3e-09 67.4 169 26.0
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 3.0e-09 67.0 77 42.9
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 4.7e-07 59.7 82 42.7
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 8.9e-06 55.5 101 34.7


User provided reference genes

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