Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p66290 Brassica napus HOM05D015966 ORTHO05D019956 9.6e-56 219.9 112 100.0
BolC3t18901H Brassica oleracea HOM05D015966 ORTHO05D019956 9.6e-56 219.9 112 100.0
C06p17560 Brassica napus HOM05D015966 ORTHO05D019956 1.7e-52 209.1 112 95.5
BolC6t36950H Brassica oleracea HOM05D015966 ORTHO05D019956 1.7e-52 209.1 112 95.5
BolC9t54896H Brassica oleracea HOM05D015966 ORTHO05D019956 1.1e-46 189.9 112 90.2
C09p19910 Brassica napus HOM05D015966 ORTHO05D019956 1.8e-46 189.1 113 89.4
BcaC04g22383 Brassica carinata HOM05D015966 ORTHO05D019956 5.1e-41 171.0 92 95.7
BcaC08g44329 Brassica carinata HOM05D031856 ORTHO05D000065 2.2e-23 112.5 63 95.2
BcaC09g48652 Brassica carinata HOM05D001728 ORTHO05D004174 3.3e-16 88.6 66 75.8
BolC1t04696H Brassica oleracea HOM05D001728 ORTHO05D004174 3.3e-16 88.6 66 75.8
Thhalv10021196m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 4.4e-16 88.2 66 74.2
Sp3g15220 Schrenkiella parvula HOM05D001728 ORTHO05D004174 5.7e-16 87.8 67 73.1
BcaB05g22858 Brassica carinata HOM05D015966 ORTHO05D092322 7.5e-16 87.4 64 73.4
C01p47260 Brassica napus HOM05D001728 ORTHO05D004174 9.7e-16 87.0 66 74.2
A01p37320 Brassica napus HOM05D001728 ORTHO05D004174 2.8e-15 85.5 66 74.2
BraA01t03790Z Brassica rapa HOM05D001728 ORTHO05D004174 2.8e-15 85.5 66 74.2
AT3G17000 Arabidopsis thaliana HOM05D001728 ORTHO05D004174 1.6e-13 79.7 57 70.2
AL3G29980 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 2.7e-13 79.0 66 66.7
CARHR092250 Cardamine hirsuta HOM05D001728 ORTHO05D004174 4.5e-13 78.2 67 70.1
Carub.0003s1675 Capsella rubella HOM05D001728 ORTHO05D004174 1.9e-11 72.8 63 68.3
Thhalv10025677m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 1.4e-09 66.6 71 56.3
Aa31LG8G4040 Aethionema arabicum HOM05D001728 ORTHO05D004174 6.8e-09 64.3 69 52.2
Sabra08G0080000 Salix brachista HOM05D001728 ORTHO05D004174 1.5e-08 63.2 62 56.5
Ciclev10005518m.g Citrus clementina HOM05D001728 ORTHO05D004174 2.6e-08 62.4 62 56.5
Potri.008G106300 Populus trichocarpa HOM05D001728 ORTHO05D004174 4.4e-08 61.6 76 47.4
BcaNung00213 Brassica carinata HOM05D001728 ORTHO05D004174 5.7e-08 61.2 71 54.9
Sp7g14760 Schrenkiella parvula HOM05D001728 ORTHO05D004174 5.7e-08 61.2 61 59.0
THA.LOC104818887 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 7.5e-08 60.8 62 53.2
AL7G38800 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 9.8e-08 60.5 51 64.7
CSS0020178 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 1.3e-07 60.1 52 59.6
Cpa.g.sc9.71 Carica papaya HOM05D001728 ORTHO05D004174 1.3e-07 60.1 63 55.6
Manes.03G203400 Manihot esculenta HOM05D001728 ORTHO05D004174 2.2e-07 59.3 58 50.0
Atru.chr4.3016 Acer truncatum HOM05D001728 ORTHO05D004174 3.7e-07 58.5 70 48.6
Hund11964 Selenicereus undatus HOM05D001728 ORTHO05D004174 4.8e-07 58.2 53 50.9
THA.LOC104820301 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 6.3e-07 57.8 59 55.9
CARHR222630 Cardamine hirsuta HOM05D001728 ORTHO05D004174 8.3e-07 57.4 65 53.8
A01p21340 Brassica napus HOM05D001728 ORTHO05D004174 1.1e-06 57.0 71 50.7
BraA01t02040Z Brassica rapa HOM05D001728 ORTHO05D004174 1.1e-06 57.0 71 50.7
HanXRQChr15g0466661 Helianthus annuus HOM05D001728 ORTHO05D004174 1.1e-06 57.0 43 65.1
Potri.010G143900 Populus trichocarpa HOM05D001728 ORTHO05D004174 1.1e-06 57.0 43 65.1
Aa31LG10G5870 Aethionema arabicum HOM05D001728 ORTHO05D004174 1.4e-06 56.6 51 62.7
HanXRQChr05g0148261 Helianthus annuus HOM05D001728 ORTHO05D004174 1.4e-06 56.6 51 60.8
BcaC09g50319 Brassica carinata HOM05D001728 ORTHO05D004174 1.8e-06 56.2 71 50.7
C01p26690 Brassica napus HOM05D001728 ORTHO05D004174 1.8e-06 56.2 71 50.7
C05p49430 Brassica napus HOM05D056811 ORTHO05D042642 1.8e-06 56.2 36 77.8
BolC5t33689H Brassica oleracea HOM05D056811 ORTHO05D042642 1.8e-06 56.2 36 77.8
MD16G1155400 Malus domestica HOM05D001728 ORTHO05D004174 2.4e-06 55.8 76 46.1
Manes.15G005200 Manihot esculenta HOM05D001728 ORTHO05D004174 2.4e-06 55.8 62 48.4
RcHm_v2.0_Chr4g0424811 Rosa chinensis HOM05D001728 ORTHO05D004174 2.4e-06 55.8 76 50.0
BcaB08g36357 Brassica carinata HOM05D015966 ORTHO05D000065 3.1e-06 55.5 35 80.0
ECA246G2493 Erigeron canadensis HOM05D001728 ORTHO05D004174 3.1e-06 55.5 43 60.5
Thecc.04G299100 Theobroma cacao HOM05D001728 ORTHO05D004174 3.1e-06 55.5 70 45.7
Carub.0007s2527 Capsella rubella HOM05D001728 ORTHO05D004174 5.4e-06 54.7 71 50.7
Sabra10G0111100 Salix brachista HOM05D001728 ORTHO05D004174 5.4e-06 54.7 62 50.0
BolC1t02610H Brassica oleracea HOM05D001728 ORTHO05D004174 7.0e-06 54.3 71 49.3
CiPaw.02G075700 Carya illinoinensis HOM05D001728 ORTHO05D004174 7.0e-06 54.3 60 43.3
Prupe.1G119000 Prunus persica HOM05D001728 ORTHO05D004174 7.0e-06 54.3 64 46.9
GSVIVG01035008001 Vitis vinifera HOM05D001728 ORTHO05D004174 7.0e-06 54.3 63 47.6
CSS0047464 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 9.1e-06 53.9 59 49.2
ClCG05G006510 Citrullus lanatus HOM05D001728 ORTHO05D004174 9.1e-06 53.9 60 45.0
Hund03118 Selenicereus undatus HOM05D001728 ORTHO05D004174 9.1e-06 53.9 53 47.2
TWI53G1778 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 9.1e-06 53.9 68 42.6


User provided reference genes

Program Settings