Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1621.3 866 100.0
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 0.0e+00 1612.8 866 99.5
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 0.0e+00 1592.0 875 98.2
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1369.8 904 82.5
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 0.0e+00 1369.8 904 82.5
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 0.0e+00 1282.3 901 77.9
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.6e-278 963.0 930 64.9
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 2.0e-262 909.4 956 60.7
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 3.3e-252 875.5 953 58.9
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.3e-248 863.6 945 58.8
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 2.0e-241 839.7 958 57.8
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 8.6e-229 797.7 935 55.9
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 2.0e-217 760.0 930 57.4
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 4.6e-214 748.8 924 54.5
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 4.0e-202 709.1 923 53.2
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 5.3e-202 708.8 836 55.3
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 2.2e-184 650.2 908 49.3
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 2.2e-184 650.2 908 49.3
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 2.5e-183 646.7 924 53.1
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 4.2e-183 646.0 924 53.0
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 2.1e-174 617.1 913 50.8
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 9.4e-159 565.1 917 50.1
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 2.7e-158 563.5 922 49.3
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 4.6e-89 333.6 770 37.0
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 2.4e-85 321.2 934 34.5
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 9.5e-26 123.2 280 30.7
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 8.3e-22 110.2 191 40.8
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 3.2e-21 108.2 177 33.9
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 5.4e-21 107.5 263 30.0
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.2e-20 106.3 489 25.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 7.8e-20 103.6 326 28.2
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.7e-19 102.4 552 26.3
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 3.0e-19 101.7 225 31.1
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.9e-18 99.0 286 29.0
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 3.3e-18 98.2 323 29.7
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.3e-18 98.2 219 32.0
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 7.3e-18 97.1 429 27.3
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 2.1e-17 95.5 330 27.6
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 2.8e-17 95.1 315 27.9
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 8.0e-17 93.6 194 34.5
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.8e-16 92.4 581 26.9
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 8.9e-16 90.1 353 26.1
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.2e-15 89.7 340 26.5
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.2e-15 89.7 348 26.7
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.5e-15 89.4 344 27.3
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 2.0e-15 89.0 280 27.5
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.0e-15 89.0 330 25.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.6e-15 88.6 214 29.9
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 2.6e-15 88.6 258 29.1
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 3.4e-15 88.2 291 28.2
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 3.4e-15 88.2 560 25.7
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 4.4e-15 87.8 230 28.7
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 5.8e-15 87.4 269 28.6
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 7.5e-15 87.0 204 33.8
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 9.8e-15 86.7 523 24.9
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 1.3e-14 86.3 282 28.7
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 2.2e-14 85.5 226 30.1
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 2.9e-14 85.1 365 27.4
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.9e-14 85.1 253 29.6
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.7e-14 84.7 330 25.2
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 4.9e-14 84.3 228 30.7
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 6.4e-14 84.0 198 33.8
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 8.3e-14 83.6 263 28.5
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.4e-13 82.8 208 29.8
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.4e-13 82.8 315 29.8
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.9e-13 82.4 208 29.8
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 3.2e-13 81.6 316 26.6
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 4.1e-13 81.3 60 63.3
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 4.1e-13 81.3 214 30.4
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 5.4e-13 80.9 279 26.9
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 7.0e-13 80.5 207 28.5
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 7.0e-13 80.5 219 31.1
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 9.2e-13 80.1 303 24.8
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 9.2e-13 80.1 506 23.5
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 9.2e-13 80.1 241 27.4
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 1.2e-12 79.7 128 39.8
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 1.2e-12 79.7 223 29.1
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 2.1e-12 79.0 305 28.2
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 2.7e-12 78.6 265 28.7
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 2.7e-12 78.6 301 24.6
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.7e-12 78.6 226 28.8
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.7e-12 78.6 76 56.6
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 4.6e-12 77.8 250 28.8
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.8e-12 77.0 621 24.6
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 1.3e-11 76.3 285 28.8
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.3e-11 76.3 519 24.7
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.7e-11 75.9 200 28.5
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.3e-11 75.5 260 28.1
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 3.9e-11 74.7 482 26.1
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 3.9e-11 74.7 180 32.2
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 5.1e-11 74.3 209 29.7
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 6.6e-11 73.9 188 31.4
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 6.6e-11 73.9 313 26.5
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 1.1e-10 73.2 204 29.4
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.1e-10 73.2 206 27.7
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.1e-10 73.2 446 22.6
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.5e-10 72.8 170 32.9
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 1.5e-10 72.8 427 24.8
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 1.9e-10 72.4 562 24.4
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 2.5e-10 72.0 277 26.0
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 3.3e-10 71.6 177 32.2
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 4.3e-10 71.2 554 25.1
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 5.6e-10 70.9 234 27.8
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 9.5e-10 70.1 170 28.8
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 9.5e-10 70.1 208 32.7
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 9.5e-10 70.1 423 23.4
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 1.2e-09 69.7 239 26.4
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.6e-09 69.3 255 24.7
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.6e-09 69.3 211 26.5
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.1e-09 68.9 287 24.7
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 2.1e-09 68.9 274 25.5
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 2.1e-09 68.9 315 26.0
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 2.8e-09 68.6 349 24.9
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 3.6e-09 68.2 298 26.2
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 8.1e-09 67.0 602 24.3
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.1e-08 66.6 303 24.1
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 2.3e-08 65.5 190 28.4
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 6.8e-08 63.9 200 29.0
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 6.8e-08 63.9 200 29.0
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.2e-07 63.2 496 23.4
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 7.5e-07 60.5 175 32.0
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 7.5e-07 60.5 487 24.4
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.7e-06 59.3 390 24.1
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.7e-06 59.3 358 28.8
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 2.2e-06 58.9 179 27.9
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 2.9e-06 58.5 190 26.8
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.9e-06 58.5 354 28.5
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 3.7e-06 58.2 245 24.9
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 6.4e-06 57.4 209 25.4


User provided reference genes

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