Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p64890 Brassica napus HOM05D007974 ORTHO05D010062 2.1e-79 298.9 146 100.0
BolC3t18751H Brassica oleracea HOM05D007974 ORTHO05D010062 2.1e-79 298.9 146 100.0
A06p28760 Brassica napus HOM05D007974 ORTHO05D010062 8.1e-71 270.4 143 93.0
BraA06t25817Z Brassica rapa HOM05D007974 ORTHO05D010062 1.8e-70 269.2 143 92.3
AT5G62065 Arabidopsis thaliana HOM05D007974 ORTHO05D010062 4.5e-53 211.5 118 83.9
AL8G38840 Arabidopsis lyrata HOM05D007974 ORTHO05D010062 2.9e-52 208.8 118 83.1
BcaB02g09619 Brassica carinata HOM05D007974 ORTHO05D010062 4.9e-52 208.0 121 89.3
Thhalv10005335m.g Eutrema salsugineum HOM05D007974 ORTHO05D010062 1.9e-51 206.1 117 82.1
Carub.0008s2274 Capsella rubella HOM05D007974 ORTHO05D010062 7.1e-51 204.1 116 81.9
Sp2g25230 Schrenkiella parvula HOM05D007974 ORTHO05D010062 6.7e-49 197.6 100 91.0
CARHR275850 Cardamine hirsuta HOM05D007974 ORTHO05D010062 1.1e-46 190.3 119 77.3
Aa31LG11G1470 Aethionema arabicum HOM05D007974 ORTHO05D010062 2.6e-45 185.7 116 73.3
THA.LOC104820164 Tarenaya hassleriana HOM05D007974 ORTHO05D010062 5.9e-37 157.9 108 67.6
Atru.chr1.506 Acer truncatum HOM05D007974 ORTHO05D010062 1.3e-28 130.2 109 54.1
CSS0036952 Camellia sinensis var. sinensis HOM05D007974 ORTHO05D010062 6.5e-28 127.9 89 62.9
CiPaw.04G066500 Carya illinoinensis HOM05D007974 ORTHO05D010062 1.9e-27 126.3 111 55.9
MSTRG.8445 Avicennia marina HOM05D007974 ORTHO05D010062 2.5e-27 125.9 92 60.9
Oeu022576.1 Olea europaea HOM05D007974 ORTHO05D010062 2.5e-27 125.9 88 62.5
Actinidia34090 Actinidia chinensis HOM05D007974 ORTHO05D010062 5.5e-27 124.8 98 57.1
Thecc.03G172000 Theobroma cacao HOM05D007974 ORTHO05D010062 1.2e-26 123.6 109 52.3
Duzib068G0871 Durio zibethinus HOM05D007974 ORTHO05D010062 1.6e-26 123.2 97 55.7
QL09p014742 Quercus lobata HOM05D007974 ORTHO05D010062 1.6e-26 123.2 108 52.8
ECA233G5549 Erigeron canadensis HOM05D007974 ORTHO05D010062 2.1e-26 122.9 110 55.5
Lsat_1_v5_gn_8_6981 Lactuca sativa HOM05D007974 ORTHO05D010062 2.1e-26 122.9 111 54.1
Dinv28469 Davidia involucrata HOM05D007974 ORTHO05D010062 2.7e-26 122.5 107 53.3
GSVIVG01010603001 Vitis vinifera HOM05D007974 ORTHO05D010062 3.6e-26 122.1 91 59.3
CiPaw.03G103600 Carya illinoinensis HOM05D007974 ORTHO05D010062 4.7e-26 121.7 118 52.5
Eucgr.K00232 Eucalyptus grandis HOM05D007974 ORTHO05D010062 6.1e-26 121.3 102 52.0
Eucgr.L02686 Eucalyptus grandis HOM05D007974 ORTHO05D010062 6.1e-26 121.3 102 52.0
Migut.F01135 Erythranthe guttata HOM05D007974 ORTHO05D010062 7.9e-26 120.9 91 60.4
Nitab4.5_0004843g0030 Nicotiana tabacum HOM05D007974 ORTHO05D010062 1.0e-25 120.6 90 57.8
Hma1.2p1_0270F.1_g108330 Hydrangea macrophylla HOM05D007974 ORTHO05D010062 1.4e-25 120.2 89 58.4
HanXRQChr13g0393691 Helianthus annuus HOM05D007974 ORTHO05D010062 1.8e-25 119.8 110 52.7
Aqoxy5G03970 Aquilegia oxysepala HOM05D007974 ORTHO05D010062 2.3e-25 119.4 94 55.3
DCAR_018180 Daucus carota HOM05D007974 ORTHO05D010062 2.3e-25 119.4 106 53.8
Manes.06G145100 Manihot esculenta HOM05D007974 ORTHO05D010062 2.3e-25 119.4 109 52.3
Ciclev10006787m.g Citrus clementina HOM05D007974 ORTHO05D010062 3.0e-25 119.0 89 51.7
Nitab4.5_0002107g0020 Nicotiana tabacum HOM05D007974 ORTHO05D010062 5.1e-25 118.2 116 49.1
Actinidia32884 Actinidia chinensis HOM05D007974 ORTHO05D010062 6.7e-25 117.9 98 54.1
COL.COLO4_14276 Corchorus olitorius HOM05D000659 ORTHO05D000505 6.7e-25 117.9 91 54.9
Solyc03g026090.4 Solanum lycopersicum HOM05D007974 ORTHO05D010062 8.8e-25 117.5 92 56.5
MBI12_g15161_MAGBIO Magnolia biondii HOM05D007974 ORTHO05D010062 1.1e-24 117.1 99 51.5
Rhsim03G0178300 Rhododendron simsii HOM05D007974 ORTHO05D010062 1.1e-24 117.1 115 52.2
PGSC0003DMG400014320 Solanum tuberosum HOM05D007974 ORTHO05D010062 1.1e-24 117.1 90 58.9
Nn6g34222 Nelumbo nucifera HOM05D007974 ORTHO05D010062 2.6e-24 115.9 105 51.4
Sopen03g004930 Solanum pennellii HOM05D007974 ORTHO05D010062 2.6e-24 115.9 92 56.5
CAN.G769.6 Capsicum annuum HOM05D007974 ORTHO05D010062 3.3e-24 115.5 101 54.5
Gohir.A12G260000 Gossypium hirsutum HOM05D007974 ORTHO05D010062 1.7e-23 113.2 93 53.8
Sc19g0000020 Simmondsia chinensis HOM05D007974 ORTHO05D010062 2.2e-23 112.8 100 53.0
Potri.012G139700 Populus trichocarpa HOM05D007974 ORTHO05D010062 4.8e-23 111.7 112 47.3
Prupe.2G291200 Prunus persica HOM05D007974 ORTHO05D010062 4.8e-23 111.7 115 47.8
arahy.Tifrunner.gnm1.ann1.G5CYYB Arachis hypogaea HOM05D007974 ORTHO05D010062 8.2e-23 110.9 92 53.3
Gohir.D12G260800 Gossypium hirsutum HOM05D007974 ORTHO05D010062 1.4e-22 110.2 93 52.7
Sc19g0001640 Simmondsia chinensis HOM05D007974 ORTHO05D010062 1.4e-22 110.2 116 47.4
Cpa.g.sc107.23 Carica papaya HOM05D007974 ORTHO05D010062 3.1e-22 109.0 92 48.9
Gorai.008G279400 Gossypium raimondii HOM05D007974 ORTHO05D010062 7.0e-22 107.8 92 52.2
EL10Ac3g05720 Beta vulgaris HOM05D007974 ORTHO05D010062 9.1e-22 107.5 117 44.4
Glyma.20G156300 Glycine max HOM05D007974 ORTHO05D010062 9.1e-22 107.5 110 45.5
Phvul.007G067200 Phaseolus vulgaris HOM05D007974 ORTHO05D010062 1.5e-21 106.7 109 47.7
VMungo0720G1552 Vigna mungo HOM05D007974 ORTHO05D010062 2.0e-21 106.3 106 45.3
MD01G1197800 Malus domestica HOM05D007974 ORTHO05D010062 2.6e-21 105.9 114 43.9
LjContig00238g0026064 Lotus japonicus HOM05D007974 ORTHO05D010062 7.7e-21 104.4 117 41.9
Glyma.10G238250 Glycine max HOM05D007974 ORTHO05D010062 1.7e-20 103.2 87 50.6
TPR.G17393 Trifolium pratense HOM05D007974 ORTHO05D010062 1.7e-20 103.2 108 47.2
Sabra12G0104700 Salix brachista HOM05D000659 ORTHO05D000505 5.0e-20 101.7 87 49.4
PGR142G2606 Punica granatum HOM05D007974 ORTHO05D010062 1.1e-19 100.5 113 42.5
RcHm_v2.0_Chr1g0376841 Rosa chinensis HOM05D007974 ORTHO05D010062 4.2e-19 98.6 115 44.3
Medtr1g101320 Medicago truncatula HOM05D007974 ORTHO05D010062 7.2e-19 97.8 108 48.1
FAN10G0057 Fragaria x ananassa HOM05D007974 ORTHO05D010062 2.7e-18 95.9 117 40.2
Cfa008290 Carpinus fangiana HOM05D007974 ORTHO05D010062 3.6e-18 95.5 108 43.5
ATR0757G011 Amborella trichopoda HOM05D007974 ORTHO05D010062 8.0e-18 94.4 108 41.7
FAN03G0127 Fragaria x ananassa HOM05D007974 ORTHO05D010062 1.4e-17 93.6 117 39.3
FvH4_7g29100 Fragaria vesca HOM05D007974 ORTHO05D010062 3.9e-17 92.0 117 38.5
FAN06G2079 Fragaria x ananassa HOM05D007974 ORTHO05D010062 8.8e-17 90.9 117 38.5
Lsat_1_v5_gn_2_131621 Lactuca sativa HOM05D007974 ORTHO05D010062 3.3e-16 89.0 92 50.0
FAN03G1543 Fragaria x ananassa HOM05D007974 ORTHO05D010062 9.7e-16 87.4 117 37.6
Gohir.D11G325151 Gossypium hirsutum HOM05D007974 ORTHO05D010062 2.6e-13 79.3 76 47.4
Actinidia03112 Actinidia chinensis HOM05D007974 ORTHO05D010062 7.7e-13 77.8 107 42.1
Potri.015G142100 Populus trichocarpa HOM05D007974 ORTHO05D010062 1.2e-08 63.9 83 36.1
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 2.0e-08 63.2 110 33.6
Medtr7g072993 Medicago truncatula HOM05D000275 ORTHO05D000181 1.8e-06 56.6 92 30.4
Thecc.04G152500 Theobroma cacao HOM05D000275 ORTHO05D000181 2.4e-06 56.2 114 32.5
Medtr7g072900 Medicago truncatula HOM05D000275 ORTHO05D000181 5.3e-06 55.1 92 29.3


User provided reference genes

Program Settings