Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 9.6e-210 733.4 413 100.0
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 9.6e-210 733.4 413 100.0
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 5.2e-208 727.6 413 99.8
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 2.4e-189 665.6 424 90.1
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 7.6e-175 617.5 420 86.7
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 5.7e-154 548.1 420 80.2
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 8.8e-147 524.2 421 76.0
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.8e-139 500.0 431 72.2
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 2.5e-133 479.6 419 70.6
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 3.3e-125 452.6 491 62.1
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.4e-120 437.2 430 66.0
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 2.1e-103 380.2 438 61.4
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 1.6e-79 300.8 425 51.5
CARHR276330 Cardamine hirsuta HOM05D005535 ORTHO05D018759 3.6e-55 219.9 219 65.8
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 3.2e-48 196.8 327 45.6
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 7.2e-48 195.7 368 42.1
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 1.6e-47 194.5 393 42.7
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 2.3e-46 190.7 327 45.6
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.3e-45 186.8 410 40.0
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.7e-44 184.5 363 41.9
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.8e-44 183.7 351 42.7
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.1e-43 181.8 412 39.1
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 1.8e-43 181.0 301 46.5
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 4.1e-43 179.9 403 39.0
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 5.3e-43 179.5 258 48.1
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 9.1e-43 178.7 371 41.0
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 2.0e-42 177.6 370 41.1
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.6e-42 177.2 371 42.6
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.6e-42 177.2 367 40.9
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.4e-42 176.8 299 45.2
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 5.9e-42 176.0 258 46.9
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.3e-41 174.9 294 44.6
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.7e-41 174.5 371 39.6
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 2.2e-41 174.1 398 38.9
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.1e-40 171.8 352 41.2
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.4e-40 171.4 247 47.4
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 3.2e-40 170.2 409 37.9
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 3.2e-40 170.2 271 44.6
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 5.5e-40 169.5 387 39.5
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 9.4e-40 168.7 360 40.8
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.2e-39 168.3 274 45.3
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.2e-39 168.3 380 39.2
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.1e-39 167.5 370 38.9
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 3.6e-39 166.8 362 39.2
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 4.7e-39 166.4 420 37.6
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 7.9e-39 165.6 397 38.8
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.0e-38 165.2 362 38.1
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 1.4e-38 164.9 354 39.3
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.8e-38 164.5 389 38.3
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 1.8e-38 164.5 375 38.7
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 2.3e-38 164.1 370 38.6
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.0e-38 163.7 374 39.8
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 5.2e-38 162.9 372 40.6
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 8.8e-38 162.2 398 36.2
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 1.1e-37 161.8 371 37.7
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 1.5e-37 161.4 362 37.6
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.6e-37 160.6 377 39.8
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 3.3e-37 160.2 348 38.5
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 5.7e-37 159.5 414 37.7
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 7.4e-37 159.1 374 38.2
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 7.4e-37 159.1 344 36.9
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.3e-36 158.3 366 39.1
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.2e-36 157.5 281 42.3
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.8e-36 157.1 349 38.7
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.8e-36 157.1 356 37.6
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 3.7e-36 156.8 349 39.8
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 8.2e-36 155.6 311 40.8
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.1e-35 155.2 363 38.6
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.4e-35 154.8 276 42.4
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.4e-35 154.1 358 39.1
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 2.4e-35 154.1 330 39.7
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 3.1e-35 153.7 287 42.2
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 4.1e-35 153.3 409 35.9
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 5.3e-35 152.9 414 36.5
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 9.1e-35 152.1 409 36.9
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.2e-34 151.8 363 38.3
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.6e-34 151.4 229 47.2
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.6e-34 151.4 292 40.8
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 5.9e-34 149.4 359 37.9
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 5.9e-34 149.4 404 35.9
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 5.9e-34 149.4 230 45.7
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 7.7e-34 149.1 265 43.0
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.0e-33 148.7 399 37.8
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.3e-33 148.3 364 38.2
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.2e-33 147.5 418 34.9
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 3.8e-33 146.7 357 37.0
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.8e-33 146.7 386 35.0
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 5.0e-33 146.4 342 35.7
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.5e-33 146.0 353 37.4
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 8.5e-33 145.6 312 41.0
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 8.5e-33 145.6 381 36.7
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 1.1e-32 145.2 373 36.5
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 1.1e-32 145.2 352 36.9
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.2e-31 141.7 408 34.3
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.6e-31 141.4 372 35.2
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 2.7e-31 140.6 317 39.7
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 2.7e-31 140.6 394 35.5
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 6.1e-31 139.4 370 37.3
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.0e-30 138.7 384 35.9
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 2.3e-30 137.5 341 35.2
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 2.3e-30 137.5 292 38.7
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 5.2e-30 136.3 281 38.4
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 6.7e-30 136.0 335 38.5
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 6.7e-30 136.0 365 35.3
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 8.8e-30 135.6 326 37.4
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 2.0e-29 134.4 250 42.8
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.6e-29 134.0 327 38.2
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 2.6e-29 134.0 377 34.5
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 3.3e-29 133.7 322 36.6
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 3.3e-29 133.7 364 37.1
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 3.3e-29 133.7 372 34.1
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.4e-29 133.3 379 35.6
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 4.4e-29 133.3 385 35.8
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.3e-28 131.7 222 41.0
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.8e-28 130.6 379 35.1
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 6.3e-28 129.4 417 34.3
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.8e-27 127.9 397 36.8
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 2.4e-27 127.5 341 36.1
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 9.1e-27 125.6 423 32.6
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 9.1e-27 125.6 382 35.6
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.2e-26 125.2 381 31.8
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 2.7e-26 124.0 290 38.3
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.5e-26 123.6 410 34.9
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 5.9e-26 122.9 233 42.5
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.0e-25 122.1 425 32.9
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.0e-25 122.1 410 34.9
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.0e-25 122.1 281 40.2
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 2.9e-25 120.6 289 37.7
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 2.1e-23 114.4 292 38.0
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 4.7e-23 113.2 353 32.3
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.5e-21 108.2 278 37.8
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 5.7e-21 106.3 224 36.6
C07p22420 Brassica napus HOM05D017569 ORTHO05D018759 1.4e-19 101.7 75 76.0
BolC7t42752H Brassica oleracea HOM05D017569 ORTHO05D018759 1.4e-19 101.7 75 76.0
A02p27560 Brassica napus HOM05D017569 ORTHO05D018759 1.8e-19 101.3 75 76.0
BraA02t07789Z Brassica rapa HOM05D017569 ORTHO05D018759 1.8e-19 101.3 75 76.0
A09p50050 Brassica napus HOM05D017569 ORTHO05D018759 1.2e-18 98.6 75 74.7
BraA09t40456Z Brassica rapa HOM05D017569 ORTHO05D018759 1.2e-18 98.6 75 74.7
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.1e-16 92.0 184 39.1
BcaC06g34882 Brassica carinata HOM05D017569 ORTHO05D018759 2.3e-14 84.3 70 70.0
THA.LOC104821571 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 1.4e-11 75.1 260 35.4
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 7.8e-10 69.3 425 26.1
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.1e-08 65.5 166 33.1
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.1e-08 65.5 157 30.6
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 5.6e-08 63.2 248 28.6
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 7.3e-08 62.8 120 35.0
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 9.5e-08 62.4 90 45.6
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 1.6e-07 61.6 225 30.2
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 6.1e-07 59.7 136 31.6
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.4e-06 58.5 130 30.8
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.8e-06 58.2 124 33.9
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.3e-06 57.8 124 33.9
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 6.8e-06 56.2 67 41.8
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 6.8e-06 56.2 148 35.8


User provided reference genes

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