Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 5.9e-289 996.9 522 100.0
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 2.9e-288 994.6 522 99.8
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 3.9e-285 984.2 522 99.0
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 1.2e-281 972.6 519 98.3
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 5.0e-280 967.2 519 97.7
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 7.0e-258 893.6 527 88.4
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 8.5e-256 886.7 537 86.2
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 2.9e-248 861.7 526 87.1
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 4.0e-245 851.3 531 85.3
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.5e-244 849.4 530 84.7
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 4.9e-243 844.3 532 84.4
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 9.2e-242 840.1 525 83.8
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 2.9e-227 792.0 535 78.5
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 1.6e-206 723.0 537 73.0
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 1.2e-185 653.7 525 74.3
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.4e-178 630.2 539 63.3
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 4.2e-178 628.6 532 63.5
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.2e-177 627.1 512 64.8
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 1.2e-177 627.1 540 63.1
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 2.7e-177 625.9 522 63.6
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.5e-177 625.5 516 64.7
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 5.1e-176 621.7 544 62.5
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.5e-175 620.2 516 63.8
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 1.3e-174 617.1 548 60.6
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 6.3e-174 614.8 537 60.7
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.1e-173 614.0 548 59.9
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.8e-173 613.2 533 63.2
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 4.5e-172 608.6 536 61.8
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.1e-170 604.0 501 65.1
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 1.4e-170 603.6 530 61.9
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 3.6e-169 599.0 524 61.6
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 1.4e-168 597.0 442 68.1
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 3.9e-168 595.5 556 58.5
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.5e-167 593.6 560 58.4
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 5.7e-167 591.7 493 63.5
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.8e-165 586.6 461 67.9
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 3.1e-165 585.9 550 59.8
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 4.1e-165 585.5 516 60.7
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 6.9e-165 584.7 557 57.6
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 1.2e-164 583.9 465 66.9
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 2.0e-164 583.2 468 66.5
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 2.6e-164 582.8 502 62.9
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 5.9e-164 581.6 517 60.0
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.0e-163 580.9 536 60.8
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 6.5e-163 578.2 468 65.2
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 6.5e-163 578.2 468 65.2
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.9e-162 576.6 537 58.8
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 5.5e-162 575.1 530 58.9
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 7.2e-162 574.7 476 65.1
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 6.1e-161 571.6 545 57.1
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 3.0e-160 569.3 517 58.8
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 5.1e-160 568.5 476 63.7
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 1.5e-159 567.0 527 58.8
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 2.0e-159 566.6 467 65.1
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 2.6e-159 566.2 542 56.3
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 2.6e-159 566.2 550 57.3
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 3.3e-159 565.8 515 58.1
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 2.2e-158 563.1 530 58.7
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 3.7e-158 562.4 517 59.4
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 3.7e-158 562.4 602 53.0
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 6.3e-158 561.6 519 58.8
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 1.4e-157 560.5 482 61.8
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 2.4e-157 559.7 516 58.5
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.1e-157 558.9 521 58.5
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 5.3e-157 558.5 450 64.9
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.5e-156 557.0 524 57.3
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 1.3e-155 553.9 474 63.1
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 3.8e-155 552.4 471 61.6
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 8.5e-155 551.2 473 60.5
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.2e-154 548.9 466 62.9
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.5e-154 548.5 465 63.2
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.2e-154 548.1 476 62.0
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 9.4e-154 547.7 500 60.0
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.6e-153 547.0 561 54.9
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.6e-153 545.8 467 62.7
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.0e-152 544.3 467 62.7
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 2.6e-151 539.7 445 64.5
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 4.4e-151 538.9 431 64.0
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 5.7e-151 538.5 506 58.3
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.3e-150 537.3 487 59.3
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.7e-150 537.0 463 59.6
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 8.2e-150 534.6 542 54.8
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 3.1e-149 532.7 520 58.7
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 4.1e-149 532.3 517 55.5
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 2.2e-147 526.6 524 56.7
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 1.9e-146 523.5 427 64.2
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 8.0e-145 518.1 552 56.0
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 1.4e-144 517.3 521 56.0
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 4.4e-143 512.3 508 55.5
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 9.7e-143 511.1 463 60.5
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 2.2e-142 510.0 458 59.2
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 2.2e-142 510.0 485 57.7
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 3.1e-141 506.1 470 60.4
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 1.1e-138 497.7 444 60.8
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 1.8e-136 490.3 480 57.1
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 8.8e-136 488.0 409 59.9
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 3.5e-132 476.1 631 47.5
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 2.3e-131 473.4 520 52.7
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 2.3e-131 473.4 324 73.5
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 3.3e-130 469.5 508 51.8
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 5.5e-130 468.8 340 70.9
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 1.4e-128 464.2 507 53.6
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.8e-128 463.8 498 50.8
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 3.4e-127 459.5 539 51.2
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 1.2e-124 451.1 299 74.9
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 4.3e-122 442.6 523 48.0
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 2.1e-121 440.3 412 58.3
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.3e-120 436.8 463 54.2
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 2.6e-103 380.2 424 52.6
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 3.5e-100 369.8 301 64.1
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.3e-89 334.7 544 41.4
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.6e-89 334.3 370 48.9
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 5.3e-88 329.3 259 65.3
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.1e-85 321.6 287 55.1
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 9.3e-69 265.4 176 75.6
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 2.8e-65 253.8 471 37.6
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 6.9e-64 249.2 283 51.6
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 3.4e-63 246.9 390 37.9
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 4.5e-55 219.9 355 36.1
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.6e-42 177.6 225 47.1
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.0e-36 156.0 95 81.1
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.8e-33 147.5 129 52.7
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 2.6e-31 141.0 200 37.0
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 2.1e-28 131.3 228 41.7
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 3.5e-23 114.0 80 66.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 5.9e-23 113.2 62 83.9
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 5.7e-18 96.7 135 40.7
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.3e-17 95.5 126 51.6
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.9e-14 84.3 83 51.8
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 1.3e-06 58.9 49 65.3


User provided reference genes

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