Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 4.7e-283 977.2 516 100.0
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 6.9e-282 973.4 516 99.6
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.2e-280 968.4 518 99.2
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 5.1e-261 904.0 521 93.9
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.1e-260 902.9 534 92.1
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 3.9e-237 824.7 515 88.0
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 4.4e-236 821.2 519 86.7
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 7.2e-231 803.9 520 85.4
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 8.5e-216 753.8 513 81.3
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 2.7e-214 748.8 517 80.7
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 3.6e-214 748.4 517 80.7
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.0e-213 746.9 517 80.5
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 3.0e-213 745.3 502 82.3
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.5e-212 743.0 509 81.1
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.8e-210 736.1 488 82.0
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 4.1e-210 734.9 516 79.5
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 9.2e-202 707.2 524 76.9
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 8.9e-189 664.1 518 71.6
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 3.5e-145 519.2 506 61.1
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.1e-135 487.6 518 57.1
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.1e-121 440.3 551 51.5
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 7.7e-116 421.8 544 50.6
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.7e-113 413.3 545 49.2
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 8.0e-113 411.8 544 49.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.8e-112 410.6 546 49.8
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.9e-112 409.5 545 48.4
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 8.8e-112 408.3 555 49.4
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 8.8e-112 408.3 557 48.7
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 9.7e-111 404.8 522 50.6
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.2e-110 403.7 549 49.7
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.1e-109 401.4 523 47.8
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.4e-109 401.0 522 49.2
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 3.1e-109 399.8 553 49.7
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 3.1e-109 399.8 527 48.6
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 3.5e-108 396.4 544 47.8
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.5e-106 391.0 562 48.0
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 1.9e-106 390.6 564 48.0
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.9e-106 390.6 562 47.5
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.6e-105 386.3 513 49.3
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 3.6e-105 386.3 549 46.6
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 8.0e-105 385.2 498 49.0
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 8.0e-105 385.2 567 48.1
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.4e-104 384.4 545 47.2
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.8e-104 384.0 521 48.4
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 4.0e-104 382.9 535 47.9
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 5.2e-104 382.5 505 48.9
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.0e-103 380.6 552 47.1
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 5.7e-103 379.0 548 47.1
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 5.7e-103 379.0 548 47.8
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 4.8e-102 375.9 541 47.3
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 6.3e-102 375.6 518 48.3
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.1e-101 374.8 574 46.0
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.1e-101 374.8 526 46.2
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-101 374.8 525 46.3
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.4e-101 374.4 526 46.2
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.4e-101 374.4 553 46.8
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-101 374.0 525 46.1
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 5.3e-101 372.5 548 46.9
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 5.3e-101 372.5 549 46.6
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 4.5e-100 369.4 518 47.3
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.9e-100 369.0 526 45.6
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 7.7e-100 368.6 497 48.1
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.0e-99 368.2 503 48.5
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.3e-99 367.9 526 48.9
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 2.2e-99 367.1 555 45.4
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 8.5e-99 365.2 552 47.6
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.1e-98 364.8 509 47.0
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.1e-98 364.8 541 46.4
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.5e-98 364.4 499 47.3
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.2e-98 363.2 547 46.1
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.6e-97 360.9 533 46.7
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.1e-97 360.5 495 48.3
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.4e-96 357.8 548 45.6
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 4.0e-96 356.3 498 46.2
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 5.2e-96 355.9 535 43.7
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.5e-95 354.4 500 47.4
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 2.6e-95 353.6 550 44.5
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.2e-94 350.5 526 45.4
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 4.8e-94 349.4 529 45.9
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 4.8e-94 349.4 505 47.1
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.8e-93 347.4 533 45.0
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 7.0e-93 345.5 526 44.3
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 2.7e-92 343.6 528 45.5
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 1.3e-91 341.3 515 45.4
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 6.6e-91 339.0 636 42.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.5e-90 337.8 523 43.4
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 3.3e-90 336.7 392 51.5
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.2e-89 334.7 537 44.7
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.6e-89 334.3 522 44.4
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.6e-89 334.3 555 44.0
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.8e-89 333.6 504 45.2
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.4e-88 331.3 543 43.6
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.0e-88 330.1 561 43.0
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 6.8e-88 328.9 489 46.8
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.9e-88 328.6 525 43.0
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 5.7e-87 325.9 537 43.0
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 7.5e-87 325.5 549 43.7
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.3e-86 324.7 516 43.2
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 2.2e-86 323.9 529 43.7
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 3.7e-86 323.2 551 41.6
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 4.9e-86 322.8 511 42.5
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 9.2e-85 318.5 528 44.1
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 6.6e-83 312.4 527 41.9
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 6.6e-83 312.4 538 42.6
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 6.6e-83 312.4 574 42.3
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 5.6e-82 309.3 380 50.0
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 8.0e-81 305.4 525 42.3
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.4e-80 304.7 535 41.9
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 1.4e-80 304.7 546 41.6
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 4.0e-80 303.1 379 49.3
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.2e-79 301.6 520 42.9
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.6e-79 300.4 544 41.5
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 3.7e-78 296.6 512 44.5
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 5.4e-77 292.7 501 43.1
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.3e-75 288.1 487 42.9
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 3.9e-75 286.6 538 42.4
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 3.9e-75 286.6 388 49.2
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 6.6e-75 285.8 522 42.7
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 8.6e-75 285.4 508 40.9
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.9e-74 284.3 542 39.5
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 6.2e-73 279.3 420 46.2
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.2e-72 276.2 396 46.5
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 5.2e-72 276.2 529 41.6
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 8.9e-72 275.4 534 41.4
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 8.9e-72 275.4 549 40.6
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 2.0e-71 274.2 528 40.3
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.9e-70 270.4 506 39.3
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 4.1e-69 266.5 490 42.4
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 1.7e-67 261.2 507 38.3
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 3.9e-67 260.0 537 39.1
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 6.6e-67 259.2 438 40.4
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 3.6e-65 253.4 503 39.0
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.1e-64 250.4 520 36.7
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 5.2e-64 249.6 398 43.5
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 3.4e-63 246.9 517 37.3
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 4.3e-58 229.9 366 41.0
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.2e-55 221.9 377 42.4
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 3.2e-53 213.8 380 40.0
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 4.2e-53 213.4 327 45.9
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.7e-52 210.7 258 51.6
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 7.3e-50 202.6 369 38.5
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.0e-48 196.8 369 38.5
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 9.0e-48 195.7 477 35.2
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.8e-47 193.0 369 38.2
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.4e-45 188.3 470 34.5
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 7.1e-45 186.0 332 40.4
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 3.3e-42 177.2 471 34.6
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 9.0e-40 169.1 295 42.4
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 9.9e-39 165.6 519 32.2
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.2e-36 158.7 415 33.5
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 1.3e-33 148.7 496 31.2
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 2.1e-33 147.9 205 48.8
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 1.8e-32 144.8 245 44.1
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 5.8e-31 139.8 214 43.0
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.5e-28 130.6 186 48.4
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.0e-27 127.5 249 36.1
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 6.7e-27 126.3 309 34.0
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 4.3e-26 123.6 206 41.3
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 2.8e-25 120.9 303 32.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 3.1e-24 117.5 206 38.8
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 2.6e-23 114.4 236 39.0
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.0e-22 112.5 170 48.8
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.0e-22 110.2 125 53.6
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 6.5e-22 109.8 109 55.0
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 1.2e-20 105.5 146 44.5
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.7e-20 104.4 276 34.8
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 4.3e-18 97.1 128 46.9
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.4e-16 92.0 273 33.3
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.2e-15 89.0 67 62.7
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 8.8e-11 72.8 120 42.5
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.5e-10 72.0 67 58.2
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 2.0e-10 71.6 94 38.3
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 9.7e-10 69.3 66 54.5
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 1.4e-08 65.5 53 58.5
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 2.0e-07 61.6 86 44.2
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 5.9e-07 60.1 275 30.5
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 2.9e-06 57.8 410 22.4


User provided reference genes

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