Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p63860 Brassica napus HOM05D001431 ORTHO05D001268 1.3e-72 276.2 130 100.0
BcaC01g02530 Brassica carinata HOM05D001431 ORTHO05D001268 8.3e-67 256.9 159 81.1
BolC3t18641H Brassica oleracea HOM05D001431 ORTHO05D001268 8.3e-67 256.9 159 81.1
A06p29610 Brassica napus HOM05D001431 ORTHO05D001268 1.2e-54 216.5 159 67.9
Thhalv10005490m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 1.4e-53 213.0 166 68.7
BraA06t25907Z Brassica rapa HOM05D001431 ORTHO05D001268 3.0e-53 211.8 160 68.1
Sp2g26010 Schrenkiella parvula HOM05D001431 ORTHO05D001268 5.7e-52 207.6 166 66.3
CARHR276660 Cardamine hirsuta HOM05D001431 ORTHO05D001268 9.5e-47 190.3 162 63.6
A02p42530 Brassica napus HOM05D001431 ORTHO05D001268 1.6e-46 189.5 164 62.8
BraA02t09182Z Brassica rapa HOM05D001431 ORTHO05D001268 1.6e-46 189.5 164 62.8
AL8G39870 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 2.3e-45 185.7 164 61.6
BcaC03g18175 Brassica carinata HOM05D001431 ORTHO05D001268 4.0e-45 184.9 163 62.0
BolC2t12300H Brassica oleracea HOM05D001431 ORTHO05D001268 7.5e-44 180.6 150 64.0
AT5G62865 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 6.4e-43 177.6 169 61.5
C02p62450 Brassica napus HOM05D001431 ORTHO05D001268 6.4e-43 177.6 150 62.7
Carub.0008s2358 Capsella rubella HOM05D001431 ORTHO05D001268 8.3e-43 177.2 167 58.1
BcaB07g29856 Brassica carinata HOM05D001431 ORTHO05D001268 1.0e-40 170.2 146 63.7
Aa31LG11G840 Aethionema arabicum HOM05D001431 ORTHO05D001268 8.9e-37 157.1 174 51.7
Aa31LG4G16660 Aethionema arabicum HOM05D001431 ORTHO05D001268 3.0e-16 89.0 137 43.8
Carub.0005s1413 Capsella rubella HOM05D001431 ORTHO05D001268 7.3e-15 84.3 125 41.6
Sp5g13960 Schrenkiella parvula HOM05D001431 ORTHO05D001268 4.8e-14 81.6 154 37.7
BcaB01g00850 Brassica carinata HOM05D001431 ORTHO05D001268 8.1e-14 80.9 152 38.2
BcaB01g00851 Brassica carinata HOM05D001431 ORTHO05D001268 1.4e-13 80.1 128 41.4
BraA06t25042Z Brassica rapa HOM05D001431 ORTHO05D001268 2.0e-12 76.3 149 36.2
CARHR156750 Cardamine hirsuta HOM05D001431 ORTHO05D001268 2.0e-12 76.3 128 42.2
BolC8t49932H Brassica oleracea HOM05D001431 ORTHO05D001268 4.4e-12 75.1 152 36.2
BcaC07g39288 Brassica carinata HOM05D001431 ORTHO05D001268 1.3e-11 73.6 142 37.3
A06p19620 Brassica napus HOM05D001431 ORTHO05D001268 2.2e-11 72.8 152 36.2
Thhalv10010820m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 2.9e-11 72.4 146 36.3
AT3G48020 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 3.8e-11 72.0 146 35.6
C08p22950 Brassica napus HOM05D001431 ORTHO05D001268 3.8e-11 72.0 144 36.8
Potri.015G073800 Populus trichocarpa HOM05D001431 ORTHO05D001268 6.4e-11 71.2 132 38.6
Manes.14G067900 Manihot esculenta HOM05D001431 ORTHO05D001268 1.4e-10 70.1 135 40.0
Prupe.3G281600 Prunus persica HOM05D001431 ORTHO05D001268 2.4e-10 69.3 143 36.4
AL5G27340 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 9.3e-10 67.4 146 34.2
Atru.chr9.2435 Acer truncatum HOM05D001431 ORTHO05D001268 2.7e-09 65.9 138 34.8
Sabra12G0056100 Salix brachista HOM05D001431 ORTHO05D001268 2.7e-09 65.9 137 38.7
Cpa.g.sc124.31 Carica papaya HOM05D001431 ORTHO05D001268 7.8e-09 64.3 159 35.2
TWI15G0604 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 7.8e-09 64.3 154 35.1
MELO3C002250.2 Cucumis melo HOM05D001431 ORTHO05D001268 1.3e-08 63.5 141 34.8
MD00G1171700 Malus domestica HOM05D001431 ORTHO05D001268 1.7e-08 63.2 140 36.4
Manes.06G102700 Manihot esculenta HOM05D001431 ORTHO05D001268 2.3e-08 62.8 128 36.7
CDE10G0322 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 3.0e-08 62.4 130 33.8
CsaV3_1G008340 Cucumis sativus L. HOM05D001431 ORTHO05D001268 3.9e-08 62.0 139 33.1
Rhsim12G0163100 Rhododendron simsii HOM05D001431 ORTHO05D001268 3.9e-08 62.0 136 37.5
CDE10G0680 Ceratophyllum demersum HOM05D001431 ORTHO05D001268 5.1e-08 61.6 130 34.6
Prupe.5G176600 Prunus persica HOM05D001431 ORTHO05D001268 5.1e-08 61.6 135 34.8
Lalb_Chr08g0236341 Lupinus albus HOM05D001431 ORTHO05D001268 6.6e-08 61.2 147 32.0
TWI60G1602 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 6.6e-08 61.2 143 35.0
Nitab4.5_0006831g0010 Nicotiana tabacum HOM05D007441 ORTHO05D009501 1.1e-07 60.5 122 36.9
Duzib205G1718 Durio zibethinus HOM05D001431 ORTHO05D001268 1.9e-07 59.7 139 38.1
Sabra15G0097900 Salix brachista HOM05D001431 ORTHO05D001268 2.5e-07 59.3 150 34.0
MD14G1183900 Malus domestica HOM05D001431 ORTHO05D001268 3.3e-07 58.9 124 33.9
TWI15G0122 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 4.3e-07 58.5 136 35.3
Nitab4.5_0010542g0040 Nicotiana tabacum HOM05D007441 ORTHO05D001268 5.6e-07 58.2 122 36.1
Haze_07487 Corylus avellana HOM05D001431 ORTHO05D001268 9.6e-07 57.4 174 31.6
Thecc.03G008300 Theobroma cacao HOM05D001431 ORTHO05D001268 9.6e-07 57.4 143 35.7
Cfa019090 Carpinus fangiana HOM05D001431 ORTHO05D001268 1.3e-06 57.0 147 33.3
CiPaw.04G023800 Carya illinoinensis HOM05D001431 ORTHO05D001268 1.3e-06 57.0 126 34.1
COL.COLO4_34066 Corchorus olitorius HOM05D001431 ORTHO05D001268 1.3e-06 57.0 143 35.0
MD09G1036100 Malus domestica HOM05D001431 ORTHO05D001268 1.3e-06 57.0 125 33.6
Nitab4.5_0000003g0460 Nicotiana tabacum HOM05D001431 ORTHO05D001268 1.6e-06 56.6 107 39.3
Lj5P122T91 Lonicera japonica HOM05D001431 ORTHO05D001268 2.1e-06 56.2 122 32.8
Nitab4.5_0007879g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.1e-06 56.2 133 35.3
Potri.012G078300 Populus trichocarpa HOM05D001431 ORTHO05D001268 2.1e-06 56.2 139 36.0
Nitab4.5_0001952g0050 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.8e-06 55.8 133 35.3
QL02p077134 Quercus lobata HOM05D001431 ORTHO05D001268 2.8e-06 55.8 128 34.4
BcaB01g00849 Brassica carinata HOM05D001431 ORTHO05D001268 3.6e-06 55.5 49 57.1
CAN.G781.33 Capsicum annuum HOM05D001431 ORTHO05D001268 3.6e-06 55.5 104 36.5
QL10p013648 Quercus lobata HOM05D001431 ORTHO05D001268 3.6e-06 55.5 153 34.0
ClCG01G012990 Citrullus lanatus HOM05D001431 ORTHO05D001268 4.8e-06 55.1 126 33.3
CsaV3_5G037310 Cucumis sativus L. HOM05D001431 ORTHO05D001268 4.8e-06 55.1 123 36.6
Medtr3g078240 Medicago truncatula HOM05D001431 ORTHO05D001268 4.8e-06 55.1 118 37.3
Sed0019889 Sechium edule HOM05D001431 ORTHO05D001268 4.8e-06 55.1 126 34.9
Sopen06g027650 Solanum pennellii HOM05D001431 ORTHO05D001268 4.8e-06 55.1 139 32.4
PGSC0003DMG400000503 Solanum tuberosum HOM05D001431 ORTHO05D001268 4.8e-06 55.1 133 33.8
THA.LOC104808387 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 4.8e-06 55.1 112 36.6
CAN.G206.43 Capsicum annuum HOM05D001431 ORTHO05D001268 6.2e-06 54.7 136 32.4
DCAR_016493 Daucus carota HOM05D001431 ORTHO05D001268 6.2e-06 54.7 134 31.3
Nn3g16930 Nelumbo nucifera HOM05D001431 ORTHO05D001268 6.2e-06 54.7 132 32.6
PSO063G3193 Papaver somniferum HOM05D001431 ORTHO05D001268 6.2e-06 54.7 133 31.6
RcHm_v2.0_Chr7g0193921 Rosa chinensis HOM05D001431 ORTHO05D001268 6.2e-06 54.7 138 34.1
SHI07895 Sapria himalayana HOM05D001431 ORTHO05D001268 6.2e-06 54.7 132 31.1
TAR371G0497 Trochodendron aralioides HOM05D001431 ORTHO05D001268 6.2e-06 54.7 123 35.0
VMungo1215G3018 Vigna mungo HOM05D001431 ORTHO05D001268 6.2e-06 54.7 130 30.0
CSS0036833 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 8.1e-06 54.3 133 33.8
CiPaw.11G029500 Carya illinoinensis HOM05D001431 ORTHO05D001268 8.1e-06 54.3 142 33.8
MELO3C021529.2 Cucumis melo HOM05D001431 ORTHO05D001268 8.1e-06 54.3 119 35.3
Duzib068G1384 Durio zibethinus HOM05D001431 ORTHO05D001268 8.1e-06 54.3 150 34.7
PSO832G1465 Papaver somniferum HOM05D001431 ORTHO05D001268 8.1e-06 54.3 133 30.8
Solyc06g071370.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 8.1e-06 54.3 139 32.4


User provided reference genes

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