Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 3.9e-108 394.8 202 100.0
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 3.9e-108 394.8 202 100.0
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 3.9e-108 394.8 202 100.0
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 8.2e-106 387.1 202 97.5
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 7.0e-105 384.0 202 96.5
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 2.0e-104 382.5 203 97.5
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 1.7e-103 379.4 202 96.5
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 2.9e-103 378.6 195 98.5
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 2.7e-101 372.1 202 93.1
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 6.1e-101 370.9 202 94.1
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 3.9e-100 368.2 202 93.1
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 5.7e-99 364.4 202 91.6
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 2.6e-83 312.4 201 81.1
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 9.1e-81 303.9 204 75.5
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 5.9e-80 301.2 206 75.2
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 1.7e-79 299.7 187 81.3
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 1.7e-79 299.7 205 73.7
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 5.0e-79 298.1 204 75.0
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 5.0e-79 298.1 204 75.0
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 6.6e-79 297.7 201 76.1
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 8.6e-79 297.4 201 76.1
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.1e-78 297.0 204 74.5
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 1.6e-77 293.1 201 74.1
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 2.8e-77 292.4 204 73.5
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 2.8e-77 292.4 202 75.7
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 6.1e-77 291.2 204 73.5
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 6.1e-77 291.2 205 72.2
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 8.0e-77 290.8 194 75.3
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 1.4e-76 290.0 204 73.0
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 1.4e-76 290.0 205 74.1
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 3.0e-76 288.9 202 74.3
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.0e-76 288.9 202 73.3
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 4.0e-76 288.5 205 74.1
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.2e-76 288.1 202 73.3
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 5.2e-76 288.1 205 74.6
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 6.8e-76 287.7 193 74.1
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 6.8e-76 287.7 204 74.0
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 1.2e-75 287.0 204 72.5
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.5e-75 286.6 202 72.8
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.5e-75 286.6 202 72.8
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 2.0e-75 286.2 201 74.1
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 2.6e-75 285.8 205 72.2
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 3.4e-75 285.4 205 70.7
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 3.4e-75 285.4 203 72.9
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 7.5e-75 284.3 202 72.3
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 7.5e-75 284.3 196 73.0
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 9.8e-75 283.9 205 71.7
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 1.7e-74 283.1 188 77.1
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 1.7e-74 283.1 204 71.6
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 1.7e-74 283.1 203 71.4
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 2.2e-74 282.7 198 72.7
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 2.2e-74 282.7 203 73.4
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 2.2e-74 282.7 202 72.3
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 2.2e-74 282.7 204 71.1
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 3.7e-74 282.0 186 76.9
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 3.7e-74 282.0 201 73.1
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 6.3e-74 281.2 205 70.2
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 8.3e-74 280.8 206 69.9
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 1.4e-73 280.0 184 76.6
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 1.4e-73 280.0 199 73.9
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 5.4e-73 278.1 205 70.2
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 7.0e-73 277.7 205 71.2
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 9.2e-73 277.3 206 71.4
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 9.2e-73 277.3 206 68.4
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 1.2e-72 276.9 195 72.8
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 2.0e-72 276.2 201 70.6
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 2.7e-72 275.8 195 71.3
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 2.7e-72 275.8 204 70.6
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 2.7e-72 275.8 184 76.1
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 3.5e-72 275.4 206 68.0
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 5.9e-72 274.6 223 67.3
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 5.9e-72 274.6 199 71.9
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.9e-71 272.3 201 69.2
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.9e-71 272.3 201 69.2
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 3.9e-71 271.9 198 71.7
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 5.0e-71 271.6 202 68.3
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 8.6e-71 270.8 205 69.3
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.1e-70 270.4 189 73.0
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 1.1e-70 270.4 183 74.3
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 1.9e-70 269.6 205 69.3
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 2.5e-70 269.2 204 68.6
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 4.3e-70 268.5 189 72.5
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 5.6e-70 268.1 206 70.4
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 7.3e-70 267.7 203 67.5
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 7.3e-70 267.7 194 67.5
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 9.5e-70 267.3 223 65.5
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.1e-68 262.3 197 70.1
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 5.2e-68 261.5 202 68.8
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 8.9e-68 260.8 233 60.9
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 2.0e-67 259.6 201 67.2
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.4e-67 258.8 204 69.6
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 5.8e-67 258.1 205 65.9
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 1.3e-66 256.9 224 62.5
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 1.4e-65 253.4 205 64.4
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 1.9e-65 253.1 174 74.7
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 3.3e-62 242.3 314 47.5
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 2.8e-61 239.2 240 56.2
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 8.0e-61 237.7 161 77.0
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 1.2e-59 233.8 204 60.3
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 7.1e-57 224.6 160 71.2
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 1.6e-53 213.4 153 70.6
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.9e-49 199.9 133 74.4
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 2.5e-46 189.5 134 71.6
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 1.6e-45 186.8 116 80.2
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 3.6e-45 185.7 118 78.0
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 1.1e-44 184.1 134 70.1
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 5.8e-43 178.3 133 68.4
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 9.3e-41 171.0 152 59.2
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 1.6e-40 170.2 106 77.4
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 1.3e-39 167.2 118 70.3
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 8.7e-39 164.5 108 75.0
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 7.1e-33 144.8 177 44.1
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 7.8e-32 141.4 184 44.6
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.0e-31 141.0 147 54.4
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 2.3e-31 139.8 189 50.3
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 3.8e-26 122.5 92 69.6
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 6.0e-24 115.2 134 50.0
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 2.3e-23 113.2 138 46.4
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 5.6e-22 108.6 212 35.4
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 2.1e-21 106.7 210 38.6
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 6.9e-20 101.7 247 30.4
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 2.9e-10 69.7 167 32.3
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.9e-09 67.0 48 68.8
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 1.0e-07 61.2 71 45.1
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 3.9e-07 59.3 35 80.0
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 5.1e-07 58.9 55 60.0


User provided reference genes

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