Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-176 623.2 319 100.0
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.7e-169 598.2 315 96.8
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 7.5e-154 547.4 285 97.5
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 3.2e-152 542.0 285 96.5
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.0e-146 522.7 267 99.6
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.1e-141 506.9 293 90.8
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 3.6e-140 501.9 293 90.8
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.1e-125 453.8 309 78.3
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 7.3e-125 451.1 309 78.0
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.0e-122 443.0 309 76.1
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.7e-121 439.9 309 75.1
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.7e-118 429.9 309 74.4
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 3.3e-117 425.6 308 73.4
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.3e-113 413.7 307 73.3
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 6.4e-113 411.4 309 72.2
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 4.2e-112 408.7 306 72.5
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.1e-107 394.0 254 81.1
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 3.1e-107 392.5 307 68.7
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 7.4e-101 371.3 255 77.3
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 6.1e-87 325.1 309 57.6
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 8.2e-84 314.7 303 58.7
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 4.6e-79 298.9 300 63.0
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 8.8e-70 268.1 312 47.4
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 3.7e-68 262.7 309 47.2
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 3.2e-64 249.6 310 47.1
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.4e-64 248.1 300 46.3
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.2e-63 247.7 312 45.2
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.1e-63 246.9 308 44.5
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.7e-63 246.5 308 44.5
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.0e-62 244.6 310 46.5
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 2.3e-62 243.4 306 45.8
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 5.2e-62 242.3 309 44.7
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.5e-61 240.7 307 44.0
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.7e-60 237.3 308 46.4
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 6.3e-60 235.3 311 43.7
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 8.2e-60 235.0 308 47.4
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.4e-59 234.2 310 44.5
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.4e-59 233.4 311 43.4
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.4e-59 233.4 307 44.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 5.3e-59 232.3 311 44.1
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.2e-58 231.1 310 43.5
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.6e-58 230.7 310 44.8
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.9e-58 228.8 308 43.8
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 7.7e-58 228.4 308 43.5
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.7e-57 227.3 308 44.8
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.9e-56 223.8 305 43.6
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 1.9e-56 223.8 308 45.1
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 4.2e-56 222.6 309 42.7
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 8.0e-55 218.4 328 42.7
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 8.0e-55 218.4 310 42.9
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.4e-54 217.6 305 43.6
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.8e-54 217.2 296 43.9
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 2.3e-54 216.9 319 42.9
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 8.8e-54 214.9 293 44.0
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 8.8e-54 214.9 320 42.5
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.6e-53 213.4 300 42.7
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.4e-53 213.0 299 41.5
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 3.4e-53 213.0 265 46.8
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.4e-53 212.6 305 41.0
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.7e-53 212.2 290 43.8
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.8e-52 209.9 293 43.0
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 6.3e-52 208.8 298 41.6
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.3e-52 208.4 293 43.0
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.1e-51 208.0 290 43.4
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 3.1e-51 206.5 294 42.9
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 4.1e-51 206.1 253 45.8
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.2e-50 204.5 306 41.2
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.3e-49 201.1 253 45.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.9e-49 199.9 299 40.8
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.5e-48 197.6 308 39.9
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 1.9e-48 197.2 301 42.2
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 3.2e-48 196.4 329 39.8
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 9.4e-48 194.9 308 39.6
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.6e-47 194.1 255 44.3
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.1e-47 193.7 260 44.6
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 6.1e-47 192.2 256 43.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 6.1e-47 192.2 303 40.3
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 6.1e-47 192.2 309 40.5
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 1.0e-46 191.4 305 40.7
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.8e-46 190.7 308 39.3
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 4.0e-46 189.5 319 37.9
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 5.2e-46 189.1 280 40.7
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 5.2e-46 189.1 255 43.1
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.2e-45 188.0 314 38.2
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.5e-45 187.6 255 43.1
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.6e-45 186.8 256 42.6
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.4e-45 186.4 278 39.2
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.4e-45 186.0 306 39.9
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 7.5e-45 185.3 304 40.8
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.3e-44 184.5 304 39.8
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.7e-44 184.1 297 40.4
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.2e-44 183.7 291 39.5
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.8e-44 183.3 299 41.8
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.8e-44 183.3 257 42.0
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 3.7e-44 183.0 268 42.5
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 4.9e-44 182.6 302 39.1
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.4e-43 181.0 257 42.4
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 2.4e-43 180.3 297 37.4
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 2.4e-43 180.3 309 40.1
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.1e-43 179.5 294 39.8
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 5.4e-43 179.1 306 38.9
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 9.2e-43 178.3 302 40.4
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.6e-42 177.6 296 38.9
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.9e-42 175.6 253 45.1
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.0e-41 174.9 252 41.3
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.7e-41 174.1 306 39.9
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.3e-41 173.7 309 38.5
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.3e-41 173.7 309 38.5
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 5.0e-41 172.6 253 40.7
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 6.6e-41 172.2 311 37.6
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 6.6e-41 172.2 313 36.4
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 2.5e-40 170.2 309 36.9
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 3.3e-40 169.9 255 42.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 3.3e-40 169.9 257 42.8
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 7.3e-40 168.7 255 42.0
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 7.3e-40 168.7 248 42.7
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.6e-39 167.5 253 40.3
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 2.1e-39 167.2 248 40.3
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 2.8e-39 166.8 247 38.9
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 3.6e-39 166.4 252 41.7
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 8.0e-39 165.2 255 42.7
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 2.3e-38 163.7 300 39.0
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 8.9e-38 161.8 255 39.2
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 8.9e-38 161.8 295 38.0
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.0e-37 160.6 297 39.4
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 3.4e-37 159.8 250 38.0
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 2.2e-36 157.1 297 37.7
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.9e-36 156.0 300 36.0
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 3.2e-35 153.3 260 39.2
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.6e-34 151.0 255 36.5
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.7e-33 147.5 314 32.2
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 5.0e-33 146.0 253 39.1
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.9e-32 144.1 166 44.0
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.3e-32 143.3 162 46.3
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 5.6e-32 142.5 254 36.6
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.1e-30 136.7 106 58.5
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.4e-29 132.9 106 57.5
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.8e-29 132.5 303 31.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.2e-27 125.2 106 55.7
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.7e-25 120.9 181 38.7
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.6e-23 114.4 215 40.0
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 1.2e-21 108.2 70 72.9
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 7.5e-21 105.5 223 33.6
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.2e-19 100.1 189 34.4
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 2.3e-14 84.0 261 31.0
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.2e-13 81.6 114 47.4
BolC3t18615H Brassica oleracea HOM05D053124 ORTHO05D105230 3.3e-08 63.5 33 93.9
BolC8t50876H Brassica oleracea HOM05D053124 ORTHO05D105227 3.3e-08 63.5 33 93.9
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 3.1e-06 57.0 218 27.1
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.2e-06 56.2 40 62.5


User provided reference genes

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