Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 4.4e-39 164.5 102 100.0
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 4.4e-39 164.5 102 100.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 4.8e-38 161.0 102 93.1
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 1.8e-37 159.1 102 92.2
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.8e-37 159.1 102 92.2
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 2.5e-34 148.7 102 86.3
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 2.5e-34 148.7 100 88.0
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 3.2e-34 148.3 102 76.5
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 5.2e-32 141.0 102 84.3
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 3.4e-31 138.3 102 70.6
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 1.3e-30 136.3 102 76.5
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 5.4e-29 131.0 102 71.6
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 2.0e-28 129.0 102 74.5
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 1.0e-27 126.7 94 79.8
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 1.0e-27 126.7 94 79.8
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 1.0e-27 126.7 94 79.8
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 3.8e-27 124.8 102 71.6
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 1.5e-26 122.9 111 62.2
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 9.5e-26 120.2 102 66.7
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 2.6e-23 112.1 102 59.8
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.7e-22 109.4 102 59.8
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 2.8e-22 108.6 102 54.9
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 1.8e-21 105.9 102 60.8
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 3.1e-21 105.1 102 57.8
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 4.1e-21 104.8 102 57.8
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 9.2e-21 103.6 102 58.8
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 9.2e-21 103.6 102 52.9
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 1.2e-20 103.2 102 59.8
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 1.6e-20 102.8 102 56.9
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 2.0e-20 102.4 102 52.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 2.0e-20 102.4 102 57.8
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 7.8e-20 100.5 102 56.9
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 1.0e-19 100.1 102 56.9
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.3e-19 99.8 102 56.9
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 2.3e-19 99.0 102 56.9
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 2.9e-19 98.6 102 58.8
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 3.8e-19 98.2 102 52.9
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 3.8e-19 98.2 102 55.9
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 3.8e-19 98.2 102 53.9
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 5.0e-19 97.8 102 55.9
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 5.0e-19 97.8 102 55.9
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 8.6e-19 97.1 102 58.8
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.5e-18 96.3 102 61.8
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 3.3e-18 95.1 102 55.9
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 4.3e-18 94.7 102 55.9
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.6e-17 92.8 102 52.9
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.6e-17 92.8 102 52.9
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 2.1e-17 92.4 73 58.9
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 2.1e-17 92.4 73 58.9
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 2.8e-17 92.0 87 60.9
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 4.7e-17 91.3 102 50.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 4.7e-17 91.3 73 58.9
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 6.1e-17 90.9 102 53.9
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 6.1e-17 90.9 102 52.9
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 6.1e-17 90.9 102 52.9
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.0e-16 90.1 102 56.9
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.0e-16 90.1 102 56.9
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 2.3e-16 89.0 80 60.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 2.3e-16 89.0 73 57.5
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 3.0e-16 88.6 102 51.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 3.0e-16 88.6 102 51.0
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 3.0e-16 88.6 73 56.2
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 8.9e-16 87.0 102 50.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 1.2e-15 86.7 102 54.9
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 3.4e-15 85.1 102 53.9
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 3.4e-15 85.1 102 53.9
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 4.4e-15 84.7 68 55.9
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 7.5e-15 84.0 73 53.4
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 7.5e-15 84.0 102 52.9
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 1.3e-14 83.2 69 58.0
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 1.3e-14 83.2 48 85.4
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 1.7e-14 82.8 102 52.9
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 2.9e-14 82.0 100 49.0
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 3.7e-14 81.6 102 53.9
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 3.7e-14 81.6 100 51.0
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.1e-13 80.1 102 49.0
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.4e-13 79.7 73 53.4
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.4e-13 79.7 73 52.1
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 1.4e-13 79.7 73 52.1
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 1.4e-13 79.7 72 52.8
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 2.4e-13 79.0 102 50.0
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 3.2e-13 78.6 73 53.4
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 3.2e-13 78.6 73 53.4
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 1.6e-12 76.3 102 54.9
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 1.6e-12 76.3 102 50.0
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 1.0e-11 73.6 102 46.1
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 1.3e-11 73.2 102 46.1
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 2.3e-11 72.4 102 45.1
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 3.0e-11 72.0 73 50.7
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 3.0e-11 72.0 102 45.1
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 3.9e-11 71.6 102 45.1
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 5.0e-11 71.2 102 43.1
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 6.6e-11 70.9 102 44.1
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 3.3e-10 68.6 53 60.4
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 4.3e-10 68.2 82 62.2
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 5.6e-10 67.8 133 38.3
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 1.2e-09 66.6 99 51.5
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 1.6e-09 66.2 48 62.5
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 1.1e-08 63.5 48 62.5
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 1.4e-08 63.2 48 60.4
C04p43920 Brassica napus HOM05D001146 ORTHO05D000973 1.8e-08 62.8 30 96.7
BolC4t25973H Brassica oleracea HOM05D001146 ORTHO05D000973 1.8e-08 62.8 30 96.7
BcaC09g51351 Brassica carinata HOM05D006995 ORTHO05D008870 6.8e-08 60.8 50 62.0
BolC7t43312H Brassica oleracea HOM05D001146 ORTHO05D000973 8.9e-08 60.5 30 93.3
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 1.2e-07 60.1 102 52.0
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 2.6e-07 58.9 85 42.4
C06p19720 Brassica napus HOM05D001146 ORTHO05D000973 3.4e-07 58.5 48 70.8
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 7.5e-07 57.4 63 55.6
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 2.2e-06 55.8 37 70.3
BcaC01g05868 Brassica carinata HOM05D001146 ORTHO05D000973 2.9e-06 55.5 48 68.8
C03p21590 Brassica napus HOM05D001146 ORTHO05D000973 2.9e-06 55.5 48 68.8
C07p20090 Brassica napus HOM05D001146 ORTHO05D000973 2.9e-06 55.5 48 68.8
BolC3t14543H Brassica oleracea HOM05D006995 ORTHO05D104637 2.9e-06 55.5 48 68.8
BolC7t42530H Brassica oleracea HOM05D001146 ORTHO05D000973 2.9e-06 55.5 48 68.8
BcaC04g20222 Brassica carinata HOM05D001146 ORTHO05D000973 3.7e-06 55.1 27 92.6
C09p46490 Brassica napus HOM05D001146 ORTHO05D000973 3.7e-06 55.1 27 92.6


User provided reference genes

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