Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 5.0e-38 160.6 81 100.0
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 8.0e-36 153.3 76 100.0
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 8.0e-36 153.3 76 100.0
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 1.2e-34 149.4 76 98.7
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 1.2e-34 149.4 76 98.7
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 8.9e-27 123.2 77 87.0
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 8.9e-27 123.2 77 87.0
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 8.9e-27 123.2 77 87.0
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 5.7e-26 120.6 79 84.8
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 4.9e-25 117.5 77 83.1
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 4.9e-25 117.5 77 83.1
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 4.9e-25 117.5 74 79.7
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.2e-24 114.8 74 77.0
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.7e-23 111.7 79 72.2
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 3.5e-23 111.3 76 72.4
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 7.8e-23 110.2 76 72.4
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 4.0e-19 97.8 75 69.3
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 3.7e-17 91.3 81 60.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 4.3e-13 77.8 84 52.4
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 6.8e-11 70.5 85 47.1
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.4e-10 68.2 85 47.1
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.7e-09 65.9 84 47.6
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.9e-09 65.1 85 44.7
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 3.7e-09 64.7 83 45.8
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.4e-08 62.8 80 43.8
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.4e-08 62.8 80 43.8
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.4e-08 62.8 87 43.7
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.4e-08 62.8 86 45.3
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.4e-08 62.8 74 43.2
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.4e-08 62.8 85 48.2
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-08 62.4 72 45.8
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.9e-08 62.4 72 45.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.9e-08 62.4 72 45.8
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.9e-08 62.4 86 44.2
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.9e-08 62.4 86 41.9
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.9e-08 62.4 79 43.0
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 2.4e-08 62.0 85 45.9
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.4e-08 62.0 86 41.9
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.4e-08 62.0 72 45.8
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 5.4e-08 60.8 86 40.7
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 7.1e-08 60.5 87 42.5
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 9.2e-08 60.1 80 42.5
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.6e-07 59.3 86 40.7
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.6e-07 59.3 87 40.2
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.1e-07 58.9 83 41.0
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 2.7e-07 58.5 80 40.0
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 3.5e-07 58.2 84 41.7
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.6e-07 57.8 86 39.5
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.6e-07 57.8 86 39.5
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.8e-07 57.0 90 41.1
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.0e-06 56.6 85 41.2
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.0e-06 56.6 83 42.2
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.3e-06 56.2 87 42.5
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 1.3e-06 56.2 70 42.9
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.7e-06 55.8 79 41.8
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.7e-06 55.8 85 41.2
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 6.6e-06 53.9 88 38.6
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 6.6e-06 53.9 78 38.5
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 8.6e-06 53.5 89 40.4
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 8.6e-06 53.5 85 40.0
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 8.6e-06 53.5 80 45.0


User provided reference genes

Program Settings