Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 7.2e-226 786.9 408 100.0
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.0e-224 783.1 408 99.3
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 7.5e-215 750.4 409 95.4
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.7e-214 749.2 409 95.4
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 8.8e-208 726.9 387 97.7
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 7.0e-197 690.6 408 84.6
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 8.1e-177 624.0 411 79.6
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 4.4e-175 618.2 412 76.2
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 2.7e-172 609.0 410 77.3
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 2.0e-167 592.8 412 76.5
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 8.4e-166 587.4 411 76.6
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 2.9e-158 562.4 420 71.7
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 2.2e-134 483.0 404 59.9
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 3.7e-129 465.7 421 58.4
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 8.2e-129 464.5 409 58.9
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.4e-128 463.8 415 58.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.1e-128 462.2 409 58.9
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 1.2e-127 460.7 416 58.9
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 2.6e-127 459.5 409 58.4
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 3.8e-126 455.7 418 58.9
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.5e-125 453.0 418 57.4
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 5.5e-125 451.8 417 57.8
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.6e-124 450.3 418 58.6
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 6.1e-124 448.4 418 56.9
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 7.9e-124 448.0 386 60.4
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.9e-124 448.0 386 60.4
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.0e-123 447.6 416 57.0
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 2.3e-123 446.4 409 57.2
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 3.0e-123 446.0 417 57.1
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 8.8e-123 444.5 413 54.5
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.1e-122 444.1 416 57.7
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 1.5e-122 443.7 420 55.7
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.4e-122 441.4 416 56.5
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.3e-121 440.7 389 57.8
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.7e-121 440.3 415 54.2
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 3.7e-121 439.1 410 56.6
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 4.8e-121 438.7 421 54.2
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 4.8e-121 438.7 419 57.8
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 8.2e-121 438.0 416 55.0
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 8.2e-121 438.0 403 56.6
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 8.2e-121 438.0 414 55.3
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.1e-120 437.6 413 54.2
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 1.1e-120 437.6 412 56.6
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 1.1e-120 437.6 409 56.2
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.4e-120 437.2 417 55.6
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.4e-120 437.2 414 55.3
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.8e-120 436.8 415 56.1
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 1.8e-120 436.8 411 56.0
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.4e-120 436.4 416 55.5
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.1e-120 435.6 385 59.0
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 4.1e-120 435.6 441 54.6
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 6.9e-120 434.9 387 58.9
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 9.1e-120 434.5 419 55.1
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 2.6e-119 433.0 411 56.2
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 5.9e-119 431.8 414 54.3
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 5.9e-119 431.8 415 56.1
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 1.0e-118 431.0 405 56.5
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 1.0e-118 431.0 392 56.6
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.3e-118 430.6 409 54.5
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.7e-118 430.3 419 55.6
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.7e-118 430.3 412 55.3
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 2.2e-118 429.9 409 55.5
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 2.2e-118 429.9 412 55.3
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 5.0e-118 428.7 419 55.8
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 8.5e-118 427.9 416 55.8
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.1e-117 427.6 412 55.3
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.4e-117 427.2 409 55.7
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.4e-117 427.2 402 55.5
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 2.5e-117 426.4 416 55.5
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 5.5e-117 425.2 412 55.3
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 1.2e-116 424.1 389 57.6
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 3.0e-115 419.5 418 54.1
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 8.8e-115 417.9 478 47.7
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 2.0e-114 416.8 397 54.4
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 2.0e-114 416.8 405 55.3
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 2.6e-114 416.4 407 53.3
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 3.3e-114 416.0 416 54.1
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 7.4e-114 414.8 416 53.4
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 2.8e-113 412.9 420 51.0
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 2.8e-113 412.9 391 55.0
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 8.2e-113 411.4 419 53.9
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.1e-112 411.0 391 55.2
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 2.0e-111 406.8 354 59.9
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 7.7e-111 404.8 398 53.5
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 9.4e-109 397.9 350 59.7
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.6e-108 397.1 401 52.6
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 8.0e-108 394.8 413 51.6
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 2.3e-107 393.3 407 50.6
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 2.3e-107 393.3 420 50.5
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 3.7e-105 386.0 366 57.4
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 5.3e-104 382.1 422 52.1
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.6e-103 380.6 393 51.1
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 2.6e-103 379.8 397 52.4
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 7.7e-103 378.3 390 50.5
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 5.0e-102 375.6 353 56.9
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.2e-98 364.4 431 47.1
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.3e-97 360.9 447 44.3
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.8e-96 357.1 460 42.6
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 3.1e-96 356.3 358 53.1
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 4.2e-93 345.9 358 50.8
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 9.4e-93 344.7 364 48.6
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.8e-91 340.5 353 50.4
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 4.0e-91 339.3 353 52.4
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 2.6e-90 336.7 353 51.0
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.4e-83 314.3 365 45.2
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-82 311.2 302 56.3
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 4.1e-80 302.8 431 39.4
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.8e-75 287.3 443 37.0
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 5.8e-74 282.3 310 51.3
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.3e-70 271.2 264 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.4e-56 224.6 320 41.2
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 9.2e-56 221.9 227 52.4
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 3.9e-54 216.5 352 40.1
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 1.5e-53 214.5 202 55.0
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.6e-52 209.9 189 57.7
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.4e-51 208.0 162 64.8
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 3.1e-51 206.8 269 43.5
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 7.6e-50 202.2 192 54.2
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 6.6e-46 189.1 404 32.9
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 9.9e-42 175.3 224 43.8
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 7.3e-37 159.1 163 53.4
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.4e-35 154.8 139 56.1
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 1.5e-34 151.4 323 30.0
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 3.8e-33 146.7 132 59.1
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.3e-30 137.5 290 32.4
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 8.7e-30 135.6 98 73.5
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.5e-29 134.0 117 59.8
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 5.6e-29 132.9 116 66.4
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 6.9e-27 125.9 109 56.9
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 2.2e-25 120.9 331 28.4
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 6.9e-19 99.4 76 63.2
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 1.2e-18 98.6 161 36.6
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.5e-16 89.7 126 40.5
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 2.7e-15 87.4 116 41.4
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 3.2e-08 63.9 338 27.8
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 7.2e-08 62.8 44 61.4
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.6e-07 61.6 40 67.5
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.0e-06 57.4 158 31.0


User provided reference genes

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