Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 2.5e-262 908.3 470 100.0
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 2.5e-262 908.3 470 100.0
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.0e-260 902.9 470 99.4
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 3.3e-259 897.9 470 98.5
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 9.7e-259 896.3 470 98.3
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.3e-255 885.9 470 97.7
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.3e-250 869.4 471 95.5
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.3e-250 869.4 471 95.5
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 2.2e-250 868.6 471 95.5
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 1.4e-249 865.9 470 96.0
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 3.1e-249 864.8 471 95.1
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 3.1e-249 864.8 465 95.7
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 5.2e-244 847.4 472 94.5
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.5e-243 845.9 472 94.3
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 3.3e-243 844.7 465 93.8
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 9.7e-243 843.2 465 93.8
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.3e-242 842.8 468 93.2
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.3e-242 842.8 465 93.3
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 5.0e-239 830.9 473 91.3
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 5.4e-233 810.8 474 87.6
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.6e-229 798.1 474 85.2
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 7.5e-219 763.8 462 83.3
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.9e-218 761.9 462 83.1
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 3.7e-218 761.5 458 84.1
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 4.9e-218 761.1 462 82.9
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 4.9e-218 761.1 439 86.3
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 3.2e-217 758.4 437 86.7
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 4.1e-217 758.1 440 85.2
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 5.4e-217 757.7 441 85.0
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 7.0e-217 757.3 467 81.6
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.6e-216 756.1 451 84.3
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.6e-216 756.1 435 86.7
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 4.6e-216 754.6 458 82.1
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 6.0e-216 754.2 464 81.5
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 2.3e-215 752.3 436 86.0
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 2.3e-215 752.3 439 84.7
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 6.6e-215 750.7 432 86.3
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.1e-214 750.0 436 85.1
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.5e-214 748.8 439 90.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.6e-214 747.7 434 85.0
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 7.3e-214 747.3 437 85.8
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 2.1e-213 745.7 433 84.5
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 6.2e-213 744.2 439 84.5
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 6.2e-213 744.2 437 84.2
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 8.0e-213 743.8 437 84.7
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.4e-212 743.0 437 84.0
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.4e-212 743.0 446 83.6
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 5.2e-212 741.1 435 84.4
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 6.8e-212 740.7 436 84.2
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 8.9e-212 740.3 451 82.0
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 2.0e-211 739.2 467 79.9
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.0e-211 739.2 437 83.8
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.6e-211 738.8 437 82.8
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 3.4e-211 738.4 461 80.0
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 3.4e-211 738.4 462 80.7
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 7.5e-211 737.3 437 83.5
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 1.3e-210 736.5 437 83.5
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.7e-210 736.1 437 83.1
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.7e-210 736.1 429 84.8
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 2.2e-210 735.7 441 83.2
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 2.2e-210 735.7 441 82.5
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.9e-210 735.3 458 80.6
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 2.9e-210 735.3 443 81.9
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 3.7e-210 734.9 467 79.0
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 4.9e-210 734.6 458 80.3
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 6.4e-210 734.2 449 81.5
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.4e-209 733.0 433 84.1
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.9e-209 732.6 434 84.1
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 3.2e-209 731.9 464 78.7
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 3.2e-209 731.9 450 81.1
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.1e-209 731.5 429 84.1
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 4.1e-209 731.5 440 82.3
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.1e-209 731.5 437 82.6
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 5.4e-209 731.1 437 82.2
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 9.2e-209 730.3 461 80.5
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 9.2e-209 730.3 437 82.6
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 2.1e-208 729.2 464 79.5
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 4.6e-208 728.0 437 82.4
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.7e-207 726.1 435 83.0
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 3.0e-207 725.3 440 81.6
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 5.0e-207 724.5 456 80.5
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 6.6e-207 724.2 458 80.3
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 6.6e-207 724.2 454 79.5
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 8.6e-207 723.8 459 79.3
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.1e-206 723.4 457 79.9
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.3e-206 721.8 426 83.6
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 3.3e-206 721.8 437 81.2
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 3.3e-206 721.8 447 81.9
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 2.1e-205 719.2 441 79.6
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 2.8e-205 718.8 432 81.5
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.1e-204 716.8 434 81.8
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.4e-204 716.5 432 81.2
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 1.8e-204 716.1 433 82.2
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.8e-204 716.1 434 81.6
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 4.0e-204 714.9 453 79.7
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.3e-202 709.9 462 77.9
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 2.2e-202 709.1 431 81.4
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 3.7e-202 708.4 433 80.4
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 4.9e-202 708.0 436 79.8
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 6.4e-202 707.6 442 79.6
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 8.3e-202 707.2 436 79.6
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.4e-201 706.4 463 78.0
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 3.2e-201 705.3 437 80.5
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.4e-201 704.5 458 77.3
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 7.1e-201 704.1 462 77.3
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 7.1e-201 704.1 431 80.5
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.1e-200 702.6 440 80.0
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.6e-200 701.4 462 77.5
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.3e-199 699.1 437 79.6
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 3.0e-199 698.7 442 77.1
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 3.0e-199 698.7 452 77.4
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 9.5e-198 693.7 431 79.8
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.2e-197 693.3 437 80.1
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.3e-194 683.3 437 77.8
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 3.2e-193 678.7 407 82.1
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 1.2e-192 676.8 455 73.4
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 9.0e-188 660.6 384 84.6
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.0e-179 632.9 460 69.3
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 3.0e-175 619.0 438 71.2
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 3.3e-174 615.5 432 70.8
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 6.2e-173 611.3 427 72.1
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 5.3e-172 608.2 469 67.2
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 6.0e-168 594.7 434 68.2
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 1.1e-164 583.9 427 68.9
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.4e-164 582.8 350 82.0
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 2.5e-161 572.8 429 67.4
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.6e-160 570.1 474 66.0
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 1.0e-154 550.8 428 67.1
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.7e-149 532.3 318 83.3
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 6.9e-148 528.1 315 83.5
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.7e-117 426.0 441 51.5
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 1.3e-114 417.5 273 76.9
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 6.6e-114 415.2 258 81.8
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 7.2e-113 411.8 330 66.1
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 8.0e-112 408.3 289 73.0
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 5.7e-110 402.1 233 84.1
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 7.0e-108 395.2 270 74.4
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 9.5e-89 331.6 206 80.1
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.2e-88 331.3 399 52.1
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 3.2e-84 316.6 201 79.1
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 4.1e-84 316.2 176 87.5
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.6e-83 314.3 179 83.2
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 5.1e-74 282.7 219 70.3
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.6e-72 277.7 223 70.4
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 8.1e-72 275.4 223 69.5
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 5.3e-71 272.7 182 76.4
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 1.5e-70 271.2 245 64.9
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 6.4e-69 265.8 222 63.5
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 2.1e-67 260.8 401 40.9
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 2.5e-65 253.8 221 65.2
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 9.6e-65 251.9 295 48.1
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 3.3e-57 226.9 122 87.7
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.8e-50 204.5 116 84.5
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 1.5e-41 174.9 188 53.7
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.9e-37 160.6 130 63.1
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 4.2e-36 156.8 85 87.1
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 5.9e-30 136.3 158 50.6
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 6.7e-26 122.9 212 43.9
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 1.5e-25 121.7 133 45.1
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 8.2e-24 115.9 139 52.5
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 1.3e-21 108.6 67 82.1
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.8e-21 107.1 125 51.2
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 3.2e-20 104.0 105 54.3
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 3.3e-17 94.0 58 77.6
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 6.3e-16 89.7 51 94.1
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.1e-15 89.0 57 78.9
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 2.4e-15 87.8 74 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 3.1e-15 87.4 66 66.7
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.9e-12 78.2 46 87.0
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 3.6e-11 73.9 48 79.2
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.8e-10 71.6 69 60.9
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 5.2e-10 70.1 72 59.7
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 6.8e-10 69.7 49 71.4
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 3.7e-08 63.9 37 83.8
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 1.8e-07 61.6 51 66.7
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 1.2e-06 58.9 85 49.4
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 1.6e-06 58.5 31 83.9
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 3.5e-06 57.4 34 79.4


User provided reference genes

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