Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 3.9e-142 508.1 244 100.0
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 3.7e-129 464.9 245 93.5
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 2.1e-108 396.0 199 96.5
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 2.1e-108 396.0 199 96.5
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 7.6e-98 360.9 196 91.8
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-82 310.1 226 72.6
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 5.9e-66 255.0 133 91.0
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 6.7e-62 241.5 186 67.2
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.5e-61 240.4 212 62.3
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 3.1e-59 232.6 178 68.0
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 3.1e-59 232.6 178 68.0
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 7.0e-59 231.5 178 67.4
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 4.5e-58 228.8 178 66.9
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 7.7e-58 228.0 176 66.5
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 2.9e-57 226.1 176 66.5
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 3.8e-57 225.7 176 66.5
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.1e-56 224.2 176 65.9
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.1e-56 224.2 182 64.8
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 4.2e-56 222.2 176 65.9
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.6e-55 220.3 178 65.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 8.0e-55 218.0 179 65.9
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 8.0e-55 218.0 179 65.9
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 1.8e-54 216.9 182 62.1
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 5.2e-54 215.3 178 65.7
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 5.2e-54 215.3 178 65.7
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 3.3e-53 212.6 178 65.2
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.7e-41 173.7 182 50.5
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 5.9e-34 148.7 183 48.6
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 7.8e-34 148.3 186 48.4
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.3e-33 147.5 185 48.1
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.7e-33 147.1 184 46.2
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 3.8e-33 146.0 183 48.6
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 6.6e-33 145.2 183 49.2
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.1e-32 144.4 183 46.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 3.3e-32 142.9 185 45.9
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 3.3e-32 142.9 186 45.7
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 9.5e-32 141.4 183 47.5
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.2e-31 141.0 185 44.9
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.1e-31 140.2 185 45.4
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.6e-31 139.4 185 45.4
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.1e-31 138.7 185 44.9
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.3e-30 136.7 187 45.5
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 2.3e-30 136.7 181 45.9
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 3.1e-30 136.3 184 46.2
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 5.2e-30 135.6 182 45.1
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 6.8e-30 135.2 185 45.4
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 8.9e-30 134.8 187 42.8
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.2e-29 134.4 201 42.3
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.5e-29 134.0 180 48.3
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 2.0e-29 133.7 184 45.7
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 4.4e-29 132.5 207 42.0
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 5.8e-29 132.1 182 45.6
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 9.8e-29 131.3 165 45.5
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.3e-28 131.0 203 41.9
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 2.2e-28 130.2 184 44.6
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.2e-28 130.2 178 44.9
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.9e-28 129.8 183 43.2
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 2.9e-28 129.8 179 46.4
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.7e-28 129.4 167 45.5
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 4.9e-28 129.0 179 45.8
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 6.4e-28 128.6 184 44.6
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.1e-27 127.9 183 43.2
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 1.1e-27 127.9 186 44.6
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.4e-27 127.5 207 41.1
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.4e-27 127.5 229 39.7
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 2.4e-27 126.7 190 43.2
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.4e-27 126.7 185 41.6
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 4.1e-27 125.9 186 43.0
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 5.4e-27 125.6 186 43.5
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 7.0e-27 125.2 187 41.7
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 9.2e-27 124.8 185 43.8
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 9.2e-27 124.8 188 42.0
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 9.2e-27 124.8 190 40.0
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.2e-26 124.4 187 46.0
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.6e-26 124.0 186 43.0
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 1.6e-26 124.0 181 43.6
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.0e-26 123.6 188 41.0
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 2.7e-26 123.2 186 41.9
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 4.6e-26 122.5 183 40.4
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.6e-26 122.5 183 44.3
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 6.0e-26 122.1 184 40.2
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 6.0e-26 122.1 186 41.9
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 7.8e-26 121.7 178 43.8
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 7.8e-26 121.7 187 43.3
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 7.8e-26 121.7 186 41.9
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 7.8e-26 121.7 181 43.1
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 7.8e-26 121.7 186 42.5
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.7e-25 120.6 180 43.9
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 1.7e-25 120.6 187 44.9
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.7e-25 120.6 179 41.9
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.7e-25 120.6 179 41.9
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 2.3e-25 120.2 186 45.7
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 3.9e-25 119.4 181 42.5
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 5.0e-25 119.0 180 43.3
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 6.6e-25 118.6 184 41.8
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.1e-24 117.9 181 39.8
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.1e-24 117.9 180 43.3
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.5e-24 117.5 183 42.1
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.5e-24 117.5 179 43.6
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.9e-24 117.1 180 42.8
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.5e-24 116.7 185 40.0
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 3.3e-24 116.3 183 41.5
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 5.6e-24 115.5 187 41.7
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 5.6e-24 115.5 186 40.3
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 9.5e-24 114.8 185 42.7
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.6e-23 114.0 183 42.1
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 2.8e-23 113.2 186 40.3
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 3.6e-23 112.8 215 38.1
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 3.6e-23 112.8 184 38.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 6.2e-23 112.1 66 78.8
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 8.0e-23 111.7 186 40.9
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.1e-22 111.3 190 38.4
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.4e-22 110.9 192 38.0
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.8e-22 110.5 185 39.5
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.3e-22 110.2 188 39.9
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 3.1e-22 109.8 186 38.7
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 3.1e-22 109.8 183 40.4
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 5.2e-22 109.0 182 36.3
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.2e-21 107.8 196 37.2
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 5.8e-21 105.5 188 38.3
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 7.5e-21 105.1 190 38.9
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.3e-20 104.4 185 38.9
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 3.7e-20 102.8 186 37.1
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 3.2e-19 99.8 186 39.8
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.1e-18 97.1 159 40.9
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 2.7e-18 96.7 186 35.5
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.0e-17 94.7 189 34.9
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.3e-17 94.4 77 59.7
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 3.9e-17 92.8 161 40.4
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 5.1e-17 92.4 90 50.0
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.9e-16 90.5 179 36.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.5e-16 90.1 182 36.3
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.2e-15 87.8 155 36.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.6e-15 87.4 82 54.9
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.5e-13 80.9 97 44.3
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 4.9e-12 75.9 178 35.4
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 6.4e-12 75.5 180 32.8
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 3.2e-11 73.2 161 36.6
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 7.1e-11 72.0 161 37.9
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 7.1e-11 72.0 158 37.3
BolC3t17207H Brassica oleracea HOM05D004054 ORTHO05D004945 6.0e-10 68.9 41 75.6
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 6.0e-10 68.9 107 36.4
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 3.0e-09 66.6 103 40.8
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 7.3e-08 62.0 39 76.9
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 4.7e-07 59.3 182 29.1
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 4.7e-07 59.3 182 29.1
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 8.1e-07 58.5 106 38.7
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 8.9e-06 55.1 73 47.9


User provided reference genes

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