Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 3.9e-66 254.6 123 100.0
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 4.7e-64 247.7 123 95.9
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 4.0e-63 244.6 123 95.1
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 6.6e-50 200.7 123 84.6
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 6.6e-50 200.7 123 84.6
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 2.8e-48 195.3 111 86.5
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.8e-47 192.6 111 85.6
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.5e-46 189.5 112 84.8
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 2.4e-44 182.2 113 83.2
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.6e-38 162.2 111 70.3
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.4e-36 155.6 111 67.6
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.3e-32 143.3 109 66.1
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.8e-32 142.1 109 66.1
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.4e-31 139.8 110 65.5
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.0e-29 133.7 109 64.2
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.9e-21 105.5 114 53.5
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.2e-14 83.6 68 55.9
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.5e-14 83.2 77 57.1
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 3.4e-14 82.0 120 40.8
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 5.9e-14 81.3 90 45.6
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.7e-13 79.7 101 43.6
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 2.9e-13 79.0 100 43.0
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 3.8e-13 78.6 95 44.2
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 5.0e-13 78.2 72 55.6
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 8.5e-13 77.4 81 49.4
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 8.5e-13 77.4 101 43.6
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 8.5e-13 77.4 99 44.4
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 1.4e-12 76.6 78 50.0
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.2e-12 75.5 69 53.6
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 3.2e-12 75.5 75 50.7
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 3.2e-12 75.5 77 50.6
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 4.2e-12 75.1 69 52.2
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 5.5e-12 74.7 68 52.9
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 5.5e-12 74.7 87 47.1
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 7.2e-12 74.3 66 54.5
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.2e-11 73.6 81 45.7
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.6e-11 73.2 63 54.0
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 2.1e-11 72.8 86 46.5
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.7e-11 72.4 69 50.7
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.7e-11 72.4 69 50.7
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 3.6e-11 72.0 75 49.3
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.7e-11 71.6 81 45.7
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 4.7e-11 71.6 79 46.8
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 4.7e-11 71.6 78 47.4
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.8e-10 69.7 80 50.0
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 2.3e-10 69.3 69 44.9
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.9e-10 68.6 67 49.3
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 3.9e-10 68.6 66 48.5
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 3.9e-10 68.6 95 36.8
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 6.7e-10 67.8 67 49.3
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.7e-10 67.8 107 40.2
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 8.8e-10 67.4 103 43.7
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.1e-09 67.0 70 50.0
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 1.1e-09 67.0 79 45.6
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.1e-09 67.0 87 47.1
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.0e-09 66.2 101 43.6
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.0e-09 66.2 65 52.3
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 2.0e-09 66.2 101 43.6
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 2.6e-09 65.9 70 47.1
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.6e-09 65.9 70 48.6
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 4.4e-09 65.1 94 40.4
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 5.7e-09 64.7 100 41.0
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 5.7e-09 64.7 80 46.2
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 7.4e-09 64.3 72 44.4
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 7.4e-09 64.3 95 41.1
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 9.7e-09 63.9 81 42.0
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 9.7e-09 63.9 112 35.7
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.7e-08 63.2 71 45.1
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 1.7e-08 63.2 96 42.7
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.7e-08 63.2 66 45.5
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 1.7e-08 63.2 67 49.3
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.2e-08 62.8 94 40.4
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 2.2e-08 62.8 66 51.5
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 2.2e-08 62.8 126 35.7
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.8e-08 62.4 78 44.9
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 2.8e-08 62.4 76 43.4
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 2.8e-08 62.4 100 38.0
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 2.8e-08 62.4 81 42.0
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 2.8e-08 62.4 70 42.9
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 3.7e-08 62.0 85 41.2
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 3.7e-08 62.0 103 35.9
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 3.7e-08 62.0 69 47.8
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 3.7e-08 62.0 75 40.0
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.8e-08 61.6 84 46.4
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 4.8e-08 61.6 97 37.1
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.2e-08 60.8 69 43.5
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 8.2e-08 60.8 72 43.1
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 8.2e-08 60.8 85 40.0
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.1e-07 60.5 88 39.8
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 1.1e-07 60.5 73 43.8
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.4e-07 60.1 78 43.6
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.4e-07 60.1 69 40.6
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.4e-07 60.1 76 42.1
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.4e-07 60.1 83 41.0
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.8e-07 59.7 70 44.3
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.8e-07 59.7 92 37.0
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.8e-07 59.7 79 44.3
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.8e-07 59.7 69 46.4
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 1.8e-07 59.7 81 39.5
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 2.4e-07 59.3 77 48.1
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.4e-07 59.3 84 46.4
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 2.4e-07 59.3 64 42.2
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.1e-07 58.9 72 44.4
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 4.1e-07 58.5 69 44.9
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 4.1e-07 58.5 68 45.6
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 4.1e-07 58.5 95 40.0
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 5.3e-07 58.2 65 49.2
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 7.0e-07 57.8 63 42.9
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 7.0e-07 57.8 70 42.9
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 9.1e-07 57.4 88 36.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.2e-06 57.0 80 40.0
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.2e-06 57.0 67 46.3
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.2e-06 57.0 65 44.6
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.5e-06 56.6 64 43.8
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.0e-06 56.2 63 44.4
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.0e-06 56.2 69 43.5
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.6e-06 55.8 73 41.1
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.6e-06 55.8 84 36.9
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 2.6e-06 55.8 65 46.2
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 2.6e-06 55.8 67 44.8
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 3.4e-06 55.5 77 41.6
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.4e-06 55.5 69 42.0
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 5.9e-06 54.7 119 28.6
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 5.9e-06 54.7 70 40.0
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 5.9e-06 54.7 69 49.3
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 7.7e-06 54.3 90 36.7


User provided reference genes

Program Settings