Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p62150 Brassica napus HOM05D001003 ORTHO05D027563 2.7e-63 245.4 139 100.0
BolC8t50368H Brassica oleracea HOM05D001003 ORTHO05D027563 5.9e-55 217.6 128 94.5
BcaC07g39595 Brassica carinata HOM05D001003 ORTHO05D027563 7.8e-31 137.5 75 85.3
BraA07t30790Z Brassica rapa HOM05D001003 ORTHO05D003884 3.9e-30 135.2 68 89.7
BcaC08g45893 Brassica carinata HOM05D001003 ORTHO05D003884 5.1e-30 134.8 68 88.2
BolC6t38808H Brassica oleracea HOM05D001003 ORTHO05D003884 5.1e-30 134.8 68 88.2
C06p36980 Brassica napus HOM05D001003 ORTHO05D003884 8.6e-30 134.0 68 86.8
BcaB05g24450 Brassica carinata HOM05D001003 ORTHO05D003884 1.2e-28 130.2 68 86.8
C06p40510 Brassica napus HOM05D001003 ORTHO05D003884 1.2e-28 130.2 68 85.3
BolC6t39380H Brassica oleracea HOM05D001003 ORTHO05D003884 2.1e-28 129.4 68 83.8
Sp5g24470 Schrenkiella parvula HOM05D001003 ORTHO05D003884 2.1e-28 129.4 68 86.8
BcaB03g15471 Brassica carinata HOM05D001003 ORTHO05D003884 4.7e-28 128.3 68 83.8
BolC2t08708H Brassica oleracea HOM05D001003 ORTHO05D003884 8.1e-28 127.5 68 83.8
Thhalv10018316m.g Eutrema salsugineum HOM05D001003 ORTHO05D003884 1.4e-27 126.7 68 83.8
BcaB03g15893 Brassica carinata HOM05D001003 ORTHO05D003884 1.8e-27 126.3 68 80.9
BcaB03g15903 Brassica carinata HOM05D001003 ORTHO05D003884 1.8e-27 126.3 68 80.9
BcaC03g15082 Brassica carinata HOM05D001003 ORTHO05D003884 2.3e-27 125.9 68 82.4
A02p15900 Brassica napus HOM05D001003 ORTHO05D003884 2.3e-27 125.9 68 82.4
A07p35720 Brassica napus HOM05D001003 ORTHO05D003884 2.3e-27 125.9 69 84.1
C02p26350 Brassica napus HOM05D001003 ORTHO05D003884 2.3e-27 125.9 68 82.4
BraA07t31159Z Brassica rapa HOM05D001003 ORTHO05D003884 2.3e-27 125.9 69 84.1
BraA02t06643Z Brassica rapa HOM05D001003 ORTHO05D003884 3.1e-27 125.6 68 82.4
AT1G69420 Arabidopsis thaliana HOM05D001003 ORTHO05D003884 2.2e-25 119.4 68 80.9
AL2G28530 Arabidopsis lyrata HOM05D001003 ORTHO05D003884 1.4e-24 116.7 68 77.9
CARHR062300 Cardamine hirsuta HOM05D001003 ORTHO05D003884 1.4e-24 116.7 67 80.6
Carub.0002s1602 Capsella rubella HOM05D001003 ORTHO05D003884 5.4e-24 114.8 68 77.9
A07p31630 Brassica napus HOM05D001003 ORTHO05D003884 6.6e-22 107.8 65 81.5
THA.LOC104822032 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 1.1e-21 107.1 74 70.3
Aa31LG4G11450 Aethionema arabicum HOM05D001003 ORTHO05D003884 2.5e-21 105.9 67 71.6
THA.LOC104808647 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 4.3e-21 105.1 68 70.6
THA.LOC104822031 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 5.6e-21 104.8 74 68.9
Glyma.01G053300 Glycine max HOM05D001003 ORTHO05D003884 1.7e-17 93.2 60 73.3
Glyma.02G111800 Glycine max HOM05D001003 ORTHO05D003884 1.9e-16 89.7 66 65.2
Cpa.g.sc1.74 Carica papaya HOM05D001003 ORTHO05D003884 3.2e-16 89.0 67 62.7
Phvul.002G091400 Phaseolus vulgaris HOM05D001003 ORTHO05D003884 5.4e-16 88.2 58 70.7
CANSAT64G2791 Cannabis sativa HOM05D001003 ORTHO05D003884 1.2e-15 87.0 60 66.7
Gohir.D13G078700 Gossypium hirsutum HOM05D001003 ORTHO05D003884 2.1e-15 86.3 61 65.6
Gorai.013G090000 Gossypium raimondii HOM05D001003 ORTHO05D003884 2.1e-15 86.3 61 65.6
QL03p069884 Quercus lobata HOM05D001003 ORTHO05D003884 3.5e-15 85.5 58 67.2
Sed0024561 Sechium edule HOM05D001003 ORTHO05D003884 3.5e-15 85.5 61 63.9
VMungo1215G0244 Vigna mungo HOM05D001003 ORTHO05D003884 3.5e-15 85.5 58 67.2
CsaV3_5G033080 Cucumis sativus L. HOM05D001003 ORTHO05D003884 4.6e-15 85.1 61 63.9
Gohir.D04G190700 Gossypium hirsutum HOM05D001003 ORTHO05D003884 4.6e-15 85.1 54 70.4
Gorai.012G186100 Gossypium raimondii HOM05D001003 ORTHO05D003884 4.6e-15 85.1 54 70.4
Gohir.A04G146300 Gossypium hirsutum HOM05D001003 ORTHO05D003884 6.0e-15 84.7 54 70.4
Sed0009563 Sechium edule HOM05D001003 ORTHO05D003884 1.0e-14 84.0 61 62.3
CiPaw.05G129200 Carya illinoinensis HOM05D001003 ORTHO05D003884 1.3e-14 83.6 58 67.2
MELO3C012129.2 Cucumis melo HOM05D001003 ORTHO05D003884 1.7e-14 83.2 61 62.3
Lalb_Chr09g0329131 Lupinus albus HOM05D001003 ORTHO05D003884 1.7e-14 83.2 66 60.6
Nitab4.5_0000391g0090 Nicotiana tabacum HOM05D001003 ORTHO05D003884 1.7e-14 83.2 62 61.3
Ciclev10030950m.g Citrus clementina HOM05D001003 ORTHO05D003884 3.0e-14 82.4 66 59.1
Nitab4.5_0005448g0010 Nicotiana tabacum HOM05D001003 ORTHO05D003884 3.0e-14 82.4 62 61.3
THA.LOC104822904 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 3.0e-14 82.4 50 76.0
Thecc.02G338800 Theobroma cacao HOM05D001003 ORTHO05D003884 3.0e-14 82.4 54 70.4
Medtr4g082560 Medicago truncatula HOM05D001003 ORTHO05D003884 3.9e-14 82.0 67 55.2
Lj2g0023172 Lotus japonicus HOM05D001003 ORTHO05D003884 5.1e-14 81.6 56 64.3
Lj2g0027573 Lotus japonicus HOM05D001003 ORTHO05D003884 5.1e-14 81.6 56 64.3
Peaxi162Scf00222g00123 Petunia axillaris HOM05D001003 ORTHO05D003884 5.1e-14 81.6 64 64.1
TAR629G1202 Trochodendron aralioides HOM05D000759 ORTHO05D000574 6.6e-14 81.3 68 58.8
Duzib268G0875 Durio zibethinus HOM05D001003 ORTHO05D003884 8.7e-14 80.9 54 68.5
Lalb_Chr17g0340901 Lupinus albus HOM05D001003 ORTHO05D003884 8.7e-14 80.9 58 62.1
arahy.Tifrunner.gnm1.ann1.TY171H Arachis hypogaea HOM05D001003 ORTHO05D003884 1.1e-13 80.5 56 62.5
Cfa008922 Carpinus fangiana HOM05D001003 ORTHO05D003884 1.5e-13 80.1 65 63.1
arahy.Tifrunner.gnm1.ann1.2M98J4 Arachis hypogaea HOM05D001003 ORTHO05D003884 1.9e-13 79.7 67 56.7
Ca_25945_v3 Cicer arietinum L. HOM05D001003 ORTHO05D003884 1.9e-13 79.7 67 55.2
Duzib248G0508 Durio zibethinus HOM05D001003 ORTHO05D003884 1.9e-13 79.7 54 66.7
Gohir.A13G078500 Gossypium hirsutum HOM05D001003 ORTHO05D003884 1.9e-13 79.7 60 63.3
Sabra08G0068700 Salix brachista HOM05D001003 ORTHO05D003884 1.9e-13 79.7 64 60.9
TPR.G34088 Trifolium pratense HOM05D001003 ORTHO05D003884 1.9e-13 79.7 67 53.7
TAR371G0663 Trochodendron aralioides HOM05D001003 ORTHO05D003884 1.9e-13 79.7 68 58.8
Atru.chr11.1708 Acer truncatum HOM05D001003 ORTHO05D003884 2.5e-13 79.3 59 62.7
COL.COLO4_27957 Corchorus olitorius HOM05D001003 ORTHO05D003884 2.5e-13 79.3 54 68.5
Haze_11951 Corylus avellana HOM05D001003 ORTHO05D003884 2.5e-13 79.3 65 61.5
GSVIVG01012479001 Vitis vinifera HOM05D001003 ORTHO05D003884 2.5e-13 79.3 62 64.5
RcHm_v2.0_Chr4g0439071 Rosa chinensis HOM05D001003 ORTHO05D003884 3.3e-13 79.0 54 68.5
Duzib251G0588 Durio zibethinus HOM05D001003 ORTHO05D003884 4.3e-13 78.6 54 68.5
Potri.010G163200 Populus trichocarpa HOM05D001003 ORTHO05D003884 4.3e-13 78.6 64 59.4
Glyma.07G227700 Glycine max HOM05D001003 ORTHO05D003884 5.6e-13 78.2 66 57.6
PGR016G0006 Punica granatum HOM05D001003 ORTHO05D003884 5.6e-13 78.2 67 55.2
CSS0002914 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 7.3e-13 77.8 68 58.8
AUR62005856 Chenopodium quinoa HOM05D001003 ORTHO05D003884 7.3e-13 77.8 59 62.7
Psat7g154200 Pisum sativum HOM05D001003 ORTHO05D003884 7.3e-13 77.8 67 53.7
FvH4_4g30660 Fragaria vesca HOM05D001003 ORTHO05D003884 9.6e-13 77.4 54 66.7
FAN12G4096 Fragaria x ananassa HOM05D001003 ORTHO05D003884 9.6e-13 77.4 54 66.7
Lj6A783T47 Lonicera japonica HOM05D001003 ORTHO05D003884 9.6e-13 77.4 68 58.8
Manes.05G106700 Manihot esculenta HOM05D001003 ORTHO05D003884 9.6e-13 77.4 50 70.0
Potri.008G091700 Populus trichocarpa HOM05D001003 ORTHO05D003884 9.6e-13 77.4 64 59.4
Rhsim12G0133200 Rhododendron simsii HOM05D001003 ORTHO05D003884 9.6e-13 77.4 61 62.3
FAN17G2835 Fragaria x ananassa HOM05D001003 ORTHO05D003884 1.3e-12 77.0 54 66.7
Hma1.2p1_0354F.1_g133760 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 1.3e-12 77.0 73 58.9
Oeu021090.2 Olea europaea HOM05D001003 ORTHO05D003884 1.3e-12 77.0 67 62.7
Cc11_g12510 Coffea canephora HOM05D001003 ORTHO05D003884 1.6e-12 76.6 59 64.4
HanXRQChr12g0361761 Helianthus annuus HOM05D001003 ORTHO05D003884 1.6e-12 76.6 70 55.7
AUR62032848 Chenopodium quinoa HOM05D001003 ORTHO05D003884 2.1e-12 76.3 59 61.0
Dinv16693 Davidia involucrata HOM05D001003 ORTHO05D003884 2.1e-12 76.3 67 56.7
HanXRQChr08g0211101 Helianthus annuus HOM05D001003 ORTHO05D003884 2.1e-12 76.3 70 51.4
Manes.01G031800 Manihot esculenta HOM05D001003 ORTHO05D003884 2.1e-12 76.3 58 62.1
Psat0s12312g0040 Pisum sativum HOM05D001003 ORTHO05D003884 2.1e-12 76.3 67 52.2
Psat2g157720 Pisum sativum HOM05D001003 ORTHO05D003884 2.1e-12 76.3 67 52.2
Prupe.1G280400 Prunus persica HOM05D001003 ORTHO05D003884 2.1e-12 76.3 55 63.6
TPR.G19939 Trifolium pratense HOM05D001003 ORTHO05D003884 2.8e-12 75.9 67 53.7
TWI79G0452 Tripterygium wilfordii HOM05D001003 ORTHO05D003884 2.8e-12 75.9 69 50.7
DCAR_007176 Daucus carota HOM05D001003 ORTHO05D003884 6.2e-12 74.7 50 68.0
Glyma.20G030100 Glycine max HOM05D001003 ORTHO05D003884 6.2e-12 74.7 66 56.1
Sopen05g007610 Solanum pennellii HOM05D001003 ORTHO05D003884 6.2e-12 74.7 66 56.1
VMungo0251G2922 Vigna mungo HOM05D001003 ORTHO05D003884 6.2e-12 74.7 54 63.0
EL10Ac6g13274 Beta vulgaris HOM05D001003 ORTHO05D003884 8.1e-12 74.3 113 37.2
Solyc05g012790.4 Solanum lycopersicum HOM05D001003 ORTHO05D003884 8.1e-12 74.3 66 56.1
Actinidia12306 Actinidia chinensis HOM05D001003 ORTHO05D003884 1.1e-11 73.9 68 58.8
arahy.Tifrunner.gnm1.ann1.I0GXIP Arachis hypogaea HOM05D001003 ORTHO05D003884 1.1e-11 73.9 60 61.7
Medtr5g042870 Medicago truncatula HOM05D001003 ORTHO05D003884 1.1e-11 73.9 67 53.7
PSO017G6613 Papaver somniferum HOM05D001003 ORTHO05D003884 1.1e-11 73.9 87 46.0
PSO478G5070 Papaver somniferum HOM05D001003 ORTHO05D003884 1.1e-11 73.9 89 48.3
PGSC0003DMG400028336 Solanum tuberosum HOM05D001003 ORTHO05D003884 1.1e-11 73.9 66 56.1
TWI75G0974 Tripterygium wilfordii HOM05D001003 ORTHO05D003884 1.1e-11 73.9 45 71.1
vmacro16352 Vaccinium macrocarpon HOM05D001003 ORTHO05D003884 1.1e-11 73.9 65 58.5
CAN.G1638.2 Capsicum annuum HOM05D001003 ORTHO05D003884 1.4e-11 73.6 53 66.0
arahy.Tifrunner.gnm1.ann1.LC0XC4 Arachis hypogaea HOM05D001003 ORTHO05D003884 1.8e-11 73.2 60 60.0
FAN22G1214 Fragaria x ananassa HOM05D001003 ORTHO05D003884 1.8e-11 73.2 54 64.8
DCAR_030990 Daucus carota HOM05D001003 ORTHO05D003884 2.4e-11 72.8 57 61.4
Phvul.002G103600 Phaseolus vulgaris HOM05D001003 ORTHO05D003884 3.1e-11 72.4 54 59.3
ECA233G1502 Erigeron canadensis HOM05D001003 ORTHO05D003884 4.0e-11 72.0 65 53.8
MD13G1067800 Malus domestica HOM05D001003 ORTHO05D003884 6.9e-11 71.2 53 66.0
Actinidia33231 Actinidia chinensis HOM05D001003 ORTHO05D003884 9.0e-11 70.9 68 54.4
Hma1.2p1_0357F.1_g134320 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 9.0e-11 70.9 57 54.4
CSS0022092 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 1.2e-10 70.5 41 75.6
CSS0040469 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 1.2e-10 70.5 41 75.6
Aqoxy3G03506 Aquilegia oxysepala HOM05D001003 ORTHO05D003884 1.5e-10 70.1 67 52.2
Lsat_1_v5_gn_8_49341 Lactuca sativa HOM05D001003 ORTHO05D003884 2.0e-10 69.7 65 50.8
HanXRQChr17g0545391 Helianthus annuus HOM05D001003 ORTHO05D003884 4.4e-10 68.6 66 54.5
Rhsim12G0077800 Rhododendron simsii HOM05D001003 ORTHO05D003884 4.4e-10 68.6 68 54.4
Oeu057653.1 Olea europaea HOM05D001003 ORTHO05D003884 1.3e-09 67.0 59 61.0
Oeu016759.2 Olea europaea HOM05D001003 ORTHO05D003884 1.7e-09 66.6 70 54.3
Hund25203 Selenicereus undatus HOM05D001003 ORTHO05D003884 2.2e-09 66.2 50 58.0
ECA246G4697 Erigeron canadensis HOM05D001003 ORTHO05D003884 2.9e-09 65.9 56 55.4
MBI16_g14989_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D003884 2.9e-09 65.9 49 63.3
Nn3g17345 Nelumbo nucifera HOM05D001003 ORTHO05D003884 2.9e-09 65.9 68 51.5
Ah.02g129330 Amaranthus hybridus HOM05D001003 ORTHO05D003884 4.9e-09 65.1 56 55.4
Migut.L01236 Erythranthe guttata HOM05D001003 ORTHO05D003884 8.4e-09 64.3 68 52.9
Sc04g0007840 Simmondsia chinensis HOM05D001003 ORTHO05D003884 8.4e-09 64.3 50 62.0
HanXRQChr03g0072611 Helianthus annuus HOM05D001003 ORTHO05D003884 1.4e-08 63.5 51 62.7
PSO063G7182 Papaver somniferum HOM05D001003 ORTHO05D003884 1.9e-08 63.2 41 65.9
Lsat_1_v5_gn_3_51780 Lactuca sativa HOM05D001003 ORTHO05D003884 2.4e-08 62.8 67 52.2
PSO063G7276 Papaver somniferum HOM05D001003 ORTHO05D003884 2.4e-08 62.8 64 51.6
HanXRQChr09g0246031 Helianthus annuus HOM05D001003 ORTHO05D003884 4.2e-08 62.0 51 62.7
HanXRQChr15g0491041 Helianthus annuus HOM05D001003 ORTHO05D003884 4.2e-08 62.0 51 62.7
Nn4g23292 Nelumbo nucifera HOM05D001003 ORTHO05D003884 7.1e-08 61.2 41 65.9
Dinv34102 Davidia involucrata HOM05D001003 ORTHO05D003884 9.3e-08 60.8 28 92.9
SGA_v2.0_scaffold16G07738 Striga asiatica HOM05D001003 ORTHO05D003884 1.2e-07 60.5 67 50.7
ATR0730G187 Amborella trichopoda HOM05D001003 ORTHO05D003884 1.6e-07 60.1 70 42.9
MBI19_g43435_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D003884 1.6e-07 60.1 56 55.4
Zm00001eb108370 Zea mays HOM05D001003 ORTHO05D003884 3.5e-07 58.9 53 50.9
Zm00001eb326590 Zea mays HOM05D001003 ORTHO05D003884 6.0e-07 58.2 45 55.6
HanXRQChr12g0354901 Helianthus annuus HOM05D001003 ORTHO05D027563 7.9e-07 57.8 35 71.4
PGR102G0068 Punica granatum HOM05D001003 ORTHO05D003884 7.9e-07 57.8 41 61.0
SGA_v2.0_scaffold36G14416 Striga asiatica HOM05D001003 ORTHO05D003884 7.9e-07 57.8 41 65.9
MSTRG.733 Avicennia marina HOM05D001003 ORTHO05D003884 1.0e-06 57.4 63 49.2
SalBow2G2671 Salvia bowleyana HOM05D001003 ORTHO05D003884 1.0e-06 57.4 67 52.2
Os03g0209500 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D003884 1.3e-06 57.0 56 50.0
SalBow2G3343 Salvia bowleyana HOM05D001003 ORTHO05D003884 1.7e-06 56.6 65 53.8
Os07g0596000 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D003884 3.0e-06 55.8 41 63.4
HPP92_010146 Vanilla planifolia HOM05D001003 ORTHO05D003884 6.6e-06 54.7 58 50.0


User provided reference genes

Program Settings