Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 1.8e-190 669.1 334 100.0
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 1.2e-189 666.4 334 99.7
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 1.2e-189 666.4 334 99.7
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 2.8e-183 645.2 334 96.1
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 2.8e-183 645.2 334 96.1
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 4.4e-181 637.9 334 95.2
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 1.3e-177 626.3 334 93.1
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 1.2e-175 619.8 334 92.5
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 8.1e-175 617.1 331 91.2
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 1.1e-174 616.7 329 92.4
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 2.3e-174 615.5 331 90.9
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 3.1e-174 615.1 331 91.2
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 4.9e-172 607.8 334 89.8
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 2.4e-171 605.5 334 88.9
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 5.3e-158 561.2 334 80.5
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.2e-154 550.1 326 82.2
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.6e-154 549.7 329 80.9
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 3.5e-154 548.5 326 81.9
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 7.9e-154 547.4 329 81.8
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 2.3e-153 545.8 329 80.9
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.9e-153 545.0 329 80.5
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 5.1e-153 544.7 325 81.8
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.5e-152 543.1 329 80.5
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 3.6e-151 538.5 329 78.4
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 4.8e-151 538.1 328 78.4
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 4.8e-151 538.1 328 79.6
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 1.1e-150 537.0 330 77.9
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 6.9e-150 534.3 332 78.9
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 9.0e-150 533.9 332 79.2
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.2e-149 533.5 346 77.5
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 2.0e-149 532.7 329 78.4
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 2.6e-149 532.3 329 78.7
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 9.9e-149 530.4 329 77.5
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 9.9e-149 530.4 329 78.7
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 2.2e-148 529.3 334 77.8
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 3.8e-148 528.5 329 79.0
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 3.8e-148 528.5 329 77.8
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 4.9e-148 528.1 332 77.1
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 6.4e-148 527.7 329 78.7
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 6.4e-148 527.7 331 76.4
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 8.4e-148 527.3 325 78.2
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.4e-147 526.6 329 77.5
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 2.4e-147 525.8 329 76.6
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 2.4e-147 525.8 327 78.0
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 4.2e-147 525.0 330 77.0
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 4.2e-147 525.0 329 77.8
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 4.2e-147 525.0 331 77.0
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 7.1e-147 524.2 326 78.5
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 9.3e-147 523.9 334 77.2
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 1.6e-146 523.1 330 76.7
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 2.7e-146 522.3 329 76.6
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 2.7e-146 522.3 329 76.6
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 3.5e-146 521.9 331 77.0
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 4.6e-146 521.5 329 77.5
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 6.0e-146 521.2 329 77.8
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 7.9e-146 520.8 330 78.8
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 1.0e-145 520.4 331 76.1
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.0e-145 520.4 329 77.5
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 1.3e-145 520.0 330 76.1
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.3e-145 520.0 329 77.5
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 1.8e-145 519.6 329 77.2
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 2.3e-145 519.2 329 77.2
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.3e-145 519.2 332 76.8
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 3.9e-145 518.5 316 78.5
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.1e-144 516.9 331 75.5
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 1.5e-144 516.5 334 76.3
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 1.5e-144 516.5 334 73.7
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 2.5e-144 515.8 332 76.5
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 3.3e-144 515.4 330 75.2
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 3.3e-144 515.4 402 66.4
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 7.4e-144 514.2 329 74.8
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.7e-143 511.9 331 76.4
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 4.8e-143 511.5 329 74.8
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 4.8e-143 511.5 330 75.5
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.4e-142 510.0 333 74.8
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 9.0e-142 507.3 322 77.6
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 3.4e-141 505.4 330 76.1
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 3.4e-141 505.4 330 74.2
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 3.4e-141 505.4 325 75.1
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 1.3e-140 503.4 325 73.8
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 1.1e-139 500.4 325 72.9
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 1.1e-139 500.4 331 74.0
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.2e-139 498.8 329 73.3
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 4.2e-139 498.4 330 74.8
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 2.7e-138 495.7 329 74.2
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 6.0e-138 494.6 360 69.7
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 6.0e-138 494.6 360 70.0
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 7.9e-138 494.2 331 71.6
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 1.4e-134 483.4 326 73.0
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 2.4e-134 482.6 348 70.1
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 1.7e-132 476.5 318 72.6
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 8.4e-132 474.2 329 70.5
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 3.9e-129 465.3 329 71.1
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.1e-123 447.2 329 66.9
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 3.0e-121 439.1 286 74.5
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.4e-115 420.2 346 66.5
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 5.5e-115 418.3 324 63.0
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 1.4e-113 413.7 328 63.1
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 6.7e-113 411.4 329 63.5
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 8.8e-113 411.0 353 61.5
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.8e-111 405.2 287 70.4
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 8.2e-111 404.4 270 70.7
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 4.5e-109 398.7 330 60.6
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 2.0e-104 383.3 331 59.8
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.1e-102 375.9 328 57.9
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.7e-100 370.2 328 57.9
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 4.7e-98 362.1 225 75.6
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 2.6e-96 356.3 322 56.2
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 7.5e-96 354.8 330 54.8
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 1.7e-95 353.6 328 53.0
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-94 350.9 328 53.0
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-94 350.5 323 55.4
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.4e-94 349.7 223 74.4
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 9.1e-94 347.8 333 53.8
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-93 346.7 334 53.3
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-93 346.7 330 55.5
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 2.5e-91 339.7 328 52.4
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 9.4e-91 337.8 331 53.8
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 4.7e-90 335.5 328 51.8
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 1.8e-89 333.6 220 75.9
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 5.2e-89 332.0 334 52.7
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 5.7e-88 328.6 334 52.4
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 5.7e-88 328.6 334 50.6
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.1e-86 324.3 328 53.0
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-84 317.4 328 50.3
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-82 310.8 329 50.5
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 1.4e-81 307.4 233 67.0
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 7.5e-80 301.6 330 49.7
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-77 293.9 334 47.9
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 2.1e-74 283.5 264 53.0
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 8.9e-65 251.5 148 81.8
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 1.9e-62 243.8 219 55.3
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 3.6e-58 229.6 142 78.9
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 2.0e-56 223.8 138 77.5
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 7.6e-56 221.9 178 66.3
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 1.1e-54 218.0 173 66.5
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 3.6e-50 203.0 194 52.1
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 2.4e-49 200.3 215 52.1
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-47 194.5 175 54.3
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.1e-45 187.2 325 39.4
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 2.1e-45 187.2 126 69.8
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 3.6e-42 176.4 113 73.5
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 3.1e-41 173.3 136 64.0
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 2.7e-37 160.2 158 52.5
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 3.6e-34 149.8 369 31.2
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 1.9e-30 137.5 355 31.5
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 9.6e-27 125.2 344 28.5
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.6e-26 124.4 328 28.7
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 8.1e-26 122.1 79 70.9
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 1.0e-23 115.2 98 54.1
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 8.4e-23 112.1 286 30.8
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 1.9e-22 110.9 67 68.7
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 1.6e-18 97.8 255 31.0
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 8.2e-18 95.5 330 28.5
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.4e-17 94.0 59 83.1
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.2e-16 91.7 59 78.0
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.2e-15 87.4 233 30.9
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.5e-14 84.0 54 79.6
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.2e-13 81.6 45 82.2
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 6.1e-13 79.3 147 36.7
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.3e-11 73.6 51 72.5
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 3.3e-11 73.6 94 45.7
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 4.8e-10 69.7 65 55.4
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 1.4e-09 68.2 47 68.1
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.4e-09 67.4 119 35.3
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 9.1e-09 65.5 50 64.0
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 5.9e-08 62.8 46 67.4


User provided reference genes

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