Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 5.9e-175 617.5 319 100.0
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 5.9e-175 617.5 319 100.0
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 5.9e-175 617.5 319 100.0
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 7.0e-168 594.0 322 96.3
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.1e-165 586.6 322 95.7
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 8.3e-153 543.9 329 90.3
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 9.5e-141 503.8 337 80.4
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 4.0e-139 498.4 342 78.4
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 4.0e-115 418.7 320 74.4
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.9e-113 412.5 336 70.2
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 1.1e-112 410.6 335 70.7
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.1e-111 406.4 328 71.0
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 8.7e-110 401.0 327 70.9
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.5e-109 400.2 332 69.3
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 2.5e-109 399.4 331 71.3
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 5.6e-109 398.3 331 71.0
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 7.4e-101 371.3 334 66.2
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.9e-96 356.7 347 60.5
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 9.3e-96 354.4 299 69.6
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.2e-80 302.8 344 54.1
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.1e-77 294.3 359 52.9
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 6.3e-76 288.5 321 55.5
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.2e-72 276.2 322 54.0
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 3.2e-64 249.6 331 49.5
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.0e-62 244.6 354 47.2
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 2.6e-61 240.0 332 50.3
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.3e-61 239.6 332 47.9
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 5.5e-56 222.2 325 47.7
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 5.5e-56 222.2 325 47.7
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 9.8e-53 211.5 325 46.5
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 2.4e-51 206.8 326 46.3
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.0e-50 203.8 270 50.0
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 2.7e-47 193.4 375 38.1
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 8.0e-47 191.8 330 39.1
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.2e-45 188.0 366 39.1
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 2.2e-44 183.7 335 39.4
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.7e-44 183.0 364 37.1
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.4e-43 181.0 357 37.8
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.6e-42 177.6 363 36.4
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 4.5e-42 176.0 364 37.6
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.3e-41 174.5 355 36.9
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 1.1e-40 171.4 149 56.4
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 3.3e-40 169.9 357 36.1
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.3e-40 168.7 333 35.7
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 7.3e-40 168.7 333 35.7
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 7.3e-40 168.7 352 35.8
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 7.3e-40 168.7 357 37.3
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.1e-39 167.2 355 36.9
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.8e-39 166.8 332 36.4
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.4e-38 164.5 372 32.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.4e-38 164.5 322 35.4
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.8e-38 164.1 367 34.1
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.3e-38 163.7 355 36.6
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 3.0e-38 163.3 322 38.2
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.0e-38 162.9 332 35.8
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-37 161.4 94 91.5
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.2e-37 161.4 355 36.3
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.5e-37 161.0 356 35.1
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 2.6e-37 160.2 290 36.9
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 2.2e-36 157.1 355 35.8
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.2e-36 157.1 147 54.4
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 4.9e-36 156.0 354 33.1
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 6.4e-36 155.6 367 34.9
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 6.4e-36 155.6 358 34.1
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.1e-35 154.8 376 32.4
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.1e-35 154.8 366 32.0
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 2.4e-35 153.7 358 35.5
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 3.2e-35 153.3 366 34.2
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 7.0e-35 152.1 179 44.7
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 2.7e-34 150.2 386 32.9
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 4.6e-34 149.4 376 32.7
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 7.8e-34 148.7 142 53.5
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 2.3e-33 147.1 373 33.0
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 2.3e-33 147.1 327 36.1
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 3.9e-33 146.4 369 33.6
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.1e-32 144.8 360 36.1
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.5e-32 143.7 243 38.7
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 9.5e-32 141.7 365 32.1
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.8e-30 137.5 318 34.3
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 4.0e-30 136.3 182 42.9
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 4.0e-30 136.3 170 47.1
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.2e-30 136.0 305 35.1
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.5e-29 134.4 354 31.6
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.5e-29 134.4 142 47.2
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 2.0e-29 134.0 338 32.0
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 4.4e-29 132.9 113 55.8
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 4.4e-29 132.9 324 31.8
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 7.5e-29 132.1 119 49.6
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.7e-28 131.0 313 32.9
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.7e-28 131.0 330 32.4
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 3.7e-28 129.8 338 30.8
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.7e-28 129.8 358 32.1
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.7e-28 129.8 334 34.4
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 4.9e-28 129.4 189 38.6
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 6.4e-28 129.0 119 48.7
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 2.4e-27 127.1 119 47.9
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 4.1e-27 126.3 321 32.7
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 5.4e-27 125.9 360 30.3
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 5.4e-27 125.9 162 45.1
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 7.0e-27 125.6 114 56.1
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 2.7e-26 123.6 314 32.8
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 2.7e-26 123.6 300 30.0
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 6.0e-26 122.5 316 31.6
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 3.0e-25 120.2 341 33.1
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 5.0e-25 119.4 113 50.4
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 8.6e-25 118.6 169 40.8
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.1e-24 118.2 156 41.0
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.5e-24 117.9 311 32.5
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 4.3e-24 116.3 130 45.4
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.2e-23 114.8 281 30.2
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.2e-23 114.8 281 30.2
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 2.8e-23 113.6 197 37.6
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.1e-22 111.7 341 30.5
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 2.3e-22 110.5 142 48.6
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.5e-21 107.8 347 28.8
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 2.9e-20 103.6 215 32.6
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 3.7e-20 103.2 303 30.0
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 8.3e-20 102.1 113 47.8
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 8.3e-20 102.1 239 38.1
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 1.1e-19 101.7 222 32.9
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 3.2e-19 100.1 377 29.2
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.2e-19 100.1 195 35.4
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 4.1e-19 99.8 287 32.8
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 5.4e-19 99.4 238 32.4
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 7.1e-19 99.0 327 31.5
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.7e-17 94.4 312 31.4
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 1.5e-16 91.3 361 28.5
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.5e-16 90.5 288 28.5
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 4.3e-16 89.7 290 26.2
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 1.6e-15 87.8 337 27.3
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 5.8e-13 79.3 309 28.5
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.3e-12 78.2 106 43.4
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.1e-11 75.1 102 42.2
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.6e-10 71.2 259 27.4
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 6.0e-10 69.3 300 26.7
BcaC05g28701 Brassica carinata HOM05D005306 ORTHO05D006158 1.9e-08 64.3 72 52.8
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.9e-08 64.3 253 29.2
BcaNung06448 Brassica carinata HOM05D005306 ORTHO05D006158 5.6e-08 62.8 190 34.2
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 7.3e-08 62.4 126 34.9
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 7.3e-08 62.4 271 24.7
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 4.7e-07 59.7 130 31.5
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.4e-06 58.2 243 25.9
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 2.4e-06 57.4 120 31.7


User provided reference genes

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