Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p60980 Brassica napus HOM05D006735 ORTHO05D009558 8.5e-168 593.6 296 100.0
A07p02010 Brassica napus HOM05D006735 ORTHO05D009558 3.5e-137 491.9 299 82.6
BcaC04g20691 Brassica carinata HOM05D006735 ORTHO05D009558 9.2e-106 387.5 313 63.9
BcaC08g45821 Brassica carinata HOM05D006735 ORTHO05D009558 5.1e-104 381.7 320 62.8
BcaC03g15864 Brassica carinata HOM05D006735 ORTHO05D009558 6.6e-104 381.3 314 63.4
BcaC07g38146 Brassica carinata HOM05D006735 ORTHO05D009558 1.1e-103 380.6 326 61.0
BcaC09g51566 Brassica carinata HOM05D006735 ORTHO05D009558 6.2e-102 374.8 327 60.9
BcaC09g51945 Brassica carinata HOM05D006735 ORTHO05D009558 6.2e-102 374.8 320 61.2
A09p42550 Brassica napus HOM05D006735 ORTHO05D009558 3.1e-101 372.5 296 64.2
A01p26730 Brassica napus HOM05D006735 ORTHO05D009558 5.4e-98 361.7 318 59.4
C04p61000 Brassica napus HOM05D006735 ORTHO05D009558 1.1e-90 337.4 277 63.2
C09p40570 Brassica napus HOM05D006735 ORTHO05D009558 1.6e-89 333.6 277 63.2
BcaC09g48693 Brassica carinata HOM05D006735 ORTHO05D009558 1.3e-86 323.9 315 56.2
BolC9t58189H Brassica oleracea HOM05D006735 ORTHO05D009558 1.3e-86 323.9 196 85.2
BcaC01g00870 Brassica carinata HOM05D006735 ORTHO05D009558 8.1e-86 321.2 315 55.6
C09p53130 Brassica napus HOM05D006735 ORTHO05D009558 2.9e-83 312.8 192 85.4
BcaB01g02897 Brassica carinata HOM05D006735 ORTHO05D009558 8.4e-83 311.2 308 52.9
BcaC01g03559 Brassica carinata HOM05D006735 ORTHO05D009558 1.9e-82 310.1 311 53.7
BcaC03g18043 Brassica carinata HOM05D006735 ORTHO05D009558 5.1e-80 302.0 298 53.4
C01p27580 Brassica napus HOM05D006735 ORTHO05D009558 4.2e-74 282.3 195 74.9
C03p71260 Brassica napus HOM05D006735 ORTHO05D009558 1.2e-73 280.8 195 74.4
C06p04290 Brassica napus HOM05D006735 ORTHO05D009558 3.5e-73 279.3 195 73.8
C02p38090 Brassica napus HOM05D006735 ORTHO05D009558 4.6e-73 278.9 195 73.8
A10p02300 Brassica napus HOM05D006735 ORTHO05D009558 1.9e-71 273.5 191 75.4
BcaC08g43985 Brassica carinata HOM05D006735 ORTHO05D009558 1.3e-70 270.8 286 51.7
C06p06100 Brassica napus HOM05D006735 ORTHO05D009558 8.1e-70 268.1 191 74.3
C03p17760 Brassica napus HOM05D006735 ORTHO05D009558 9.0e-69 264.6 170 85.3
BolC3t17400H Brassica oleracea HOM05D006735 ORTHO05D009558 9.0e-69 264.6 303 50.2
BcaC01g02272 Brassica carinata HOM05D006735 ORTHO05D009558 3.2e-66 256.1 298 48.7
C08p49000 Brassica napus HOM05D006735 ORTHO05D009558 2.1e-65 253.4 202 68.3
C04p69030 Brassica napus HOM05D006735 ORTHO05D009558 2.6e-60 236.5 230 58.7
BcaC01g02745 Brassica carinata HOM05D006735 ORTHO05D009558 8.5e-59 231.5 108 99.1
C08p11240 Brassica napus HOM05D006735 ORTHO05D009558 7.2e-58 228.4 175 61.1
C03p85420 Brassica napus HOM05D006735 ORTHO05D009558 2.0e-52 210.3 219 56.6
BolC2t07818H Brassica oleracea HOM05D006735 ORTHO05D009558 1.2e-44 184.5 108 77.8
C09p40840 Brassica napus HOM05D006735 ORTHO05D009558 2.5e-42 176.8 115 68.7
C01p49010 Brassica napus HOM05D006735 ORTHO05D000586 3.3e-39 166.4 182 56.0
BolC3t18997H Brassica oleracea HOM05D006735 ORTHO05D009558 3.3e-39 166.4 236 44.1
C07p37620 Brassica napus HOM05D006735 ORTHO05D010262 1.4e-37 161.0 294 33.3
CARHR286360 Cardamine hirsuta HOM05D006735 ORTHO05D009558 2.4e-37 160.2 117 65.0
C05p19810 Brassica napus HOM05D006735 ORTHO05D009558 1.3e-35 154.5 103 65.0
A08p25200 Brassica napus HOM05D006735 ORTHO05D009558 2.2e-35 153.7 103 65.0
A08p25190 Brassica napus HOM05D006735 ORTHO05D009558 3.8e-35 152.9 175 55.4
C09p22370 Brassica napus HOM05D006735 ORTHO05D009558 3.8e-35 152.9 178 53.9
BcaC04g18966 Brassica carinata HOM05D006735 ORTHO05D009558 6.5e-35 152.1 280 34.3
BolC2t09633H Brassica oleracea HOM05D006735 ORTHO05D009558 1.1e-34 151.4 103 64.1
C01p49020 Brassica napus HOM05D006735 ORTHO05D009558 7.2e-34 148.7 100 65.0
BcaB04g16973 Brassica carinata HOM05D006735 ORTHO05D009558 1.0e-32 144.8 125 52.8
C04p14090 Brassica napus HOM05D006735 ORTHO05D041910 2.3e-32 143.7 106 67.0
BolC7t41471H Brassica oleracea HOM05D006735 ORTHO05D009558 1.2e-31 141.4 294 32.0
A07p01920 Brassica napus HOM05D006735 ORTHO05D009558 3.3e-31 139.8 214 38.3
BolC3t19829H Brassica oleracea HOM05D006735 ORTHO05D009558 7.5e-31 138.7 295 31.5
C03p72010 Brassica napus HOM05D006735 ORTHO05D009558 2.8e-30 136.7 115 67.8
C06p27010 Brassica napus HOM05D006735 ORTHO05D009558 3.5e-28 129.8 202 38.1
C03p67160 Brassica napus HOM05D006735 ORTHO05D009558 5.0e-27 125.9 177 45.8
AT2G19365 Arabidopsis thaliana HOM05D006735 ORTHO05D009558 6.5e-27 125.6 75 73.3
BolC8t49602H Brassica oleracea HOM05D006735 ORTHO05D009558 1.1e-26 124.8 268 31.3
C08p03780 Brassica napus HOM05D006735 ORTHO05D009558 2.5e-26 123.6 220 33.6
BolC8t50679H Brassica oleracea HOM05D006735 ORTHO05D009558 7.2e-26 122.1 269 29.7
C07p10210 Brassica napus HOM05D006735 ORTHO05D009558 4.0e-24 116.3 166 36.7
BcaC01g02992 Brassica carinata HOM05D006735 ORTHO05D009558 5.2e-24 115.9 258 31.4
BolC5t31791H Brassica oleracea HOM05D006735 ORTHO05D009558 1.3e-22 111.3 122 42.6
BolC4t22522H Brassica oleracea HOM05D006735 ORTHO05D009558 6.3e-22 109.0 171 35.7
C05p34980 Brassica napus HOM05D012420 ORTHO05D019981 4.5e-20 102.8 288 26.0
CARHR117250 Cardamine hirsuta HOM05D000477 ORTHO05D000338 7.7e-20 102.1 74 63.5
BraA06t25399Z Brassica rapa HOM05D006735 ORTHO05D009558 2.3e-19 100.5 214 33.2
BolC2t07759H Brassica oleracea HOM05D006735 ORTHO05D009558 8.6e-19 98.6 160 36.9
BcaC08g45606 Brassica carinata HOM05D015886 ORTHO05D017549 2.1e-17 94.0 312 26.3
BolC9t53784H Brassica oleracea HOM05D010326 ORTHO05D012728 6.1e-17 92.4 163 30.7
BraA02t07687Z Brassica rapa HOM05D006735 ORTHO05D009558 1.0e-16 91.7 104 40.4
BraA03t13722Z Brassica rapa HOM05D015886 ORTHO05D017549 2.3e-16 90.5 267 28.1
C07p50820 Brassica napus HOM05D010326 ORTHO05D012728 6.8e-16 89.0 206 28.2
BraA05t22472Z Brassica rapa HOM05D006735 ORTHO05D009558 6.8e-16 89.0 160 33.8
A03p12660 Brassica napus HOM05D015886 ORTHO05D017549 8.8e-16 88.6 266 28.2
BraA09t36761Z Brassica rapa HOM05D006735 ORTHO05D009558 3.4e-15 86.7 93 41.9
C05p42930 Brassica napus HOM05D006735 ORTHO05D009558 7.5e-15 85.5 104 37.5
BolC5t33020H Brassica oleracea HOM05D006735 ORTHO05D009558 7.5e-15 85.5 104 37.5
BraA10t43706Z Brassica rapa HOM05D006735 ORTHO05D009558 9.8e-15 85.1 93 41.9
A05p40380 Brassica napus HOM05D006735 ORTHO05D009558 1.3e-14 84.7 93 40.9
THA.LOC104827195 Tarenaya hassleriana HOM05D006735 ORTHO05D009558 1.3e-14 84.7 291 23.0
BcaB06g27920 Brassica carinata HOM05D012420 ORTHO05D019981 6.3e-14 82.4 203 28.1
BcaC04g20609 Brassica carinata HOM05D028599 ORTHO05D027333 8.3e-14 82.0 217 30.4
BolC9t57034H Brassica oleracea HOM05D028599 ORTHO05D027333 8.3e-14 82.0 217 30.4
Carub.0011s0008 Capsella rubella HOM05D010326 ORTHO05D012728 8.3e-14 82.0 167 28.1
C09p55340 Brassica napus HOM05D006735 ORTHO05D009558 1.4e-13 81.3 187 31.0
BraA03t15421Z Brassica rapa HOM05D028599 ORTHO05D027333 1.8e-13 80.9 84 45.2
BolC8t47857H Brassica oleracea HOM05D006735 ORTHO05D009558 2.4e-13 80.5 182 33.0
THA.LOC104818562 Tarenaya hassleriana HOM05D010326 ORTHO05D000285 3.1e-13 80.1 193 28.5
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 5.4e-13 79.3 292 24.7
BcaC02g08079 Brassica carinata HOM05D006735 ORTHO05D009558 9.2e-13 78.6 95 41.1
BcaC05g28658 Brassica carinata HOM05D010326 ORTHO05D012728 9.2e-13 78.6 309 26.2
C09p41560 Brassica napus HOM05D028599 ORTHO05D027333 9.2e-13 78.6 217 30.4
BcaB03g16838 Brassica carinata HOM05D015886 ORTHO05D017549 1.2e-12 78.2 261 27.2
C02p59260 Brassica napus HOM05D006735 ORTHO05D009558 2.7e-12 77.0 41 78.0
BraA09t36193Z Brassica rapa HOM05D012420 ORTHO05D019981 5.9e-12 75.9 213 25.8
CSS0045263 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.9e-12 75.9 229 26.6
A09p18970 Brassica napus HOM05D006735 ORTHO05D009558 7.8e-12 75.5 189 29.6
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 1.3e-11 74.7 292 24.3
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 2.9e-11 73.6 293 25.3
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 2.9e-11 73.6 293 25.3
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 6.6e-11 72.4 285 20.7
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 6.6e-11 72.4 148 27.0
CSS0029673 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.1e-10 71.6 225 26.7
Ah.08g220620 Amaranthus hybridus HOM05D000876 ORTHO05D000285 1.5e-10 71.2 149 28.9
C02p22360 Brassica napus HOM05D012420 ORTHO05D039631 1.5e-10 71.2 227 26.9
AL2G40820 Arabidopsis lyrata HOM05D006735 ORTHO05D009558 1.9e-10 70.9 90 36.7
A05p11690 Brassica napus HOM05D006735 ORTHO05D009558 1.9e-10 70.9 39 79.5
BcaC04g22485 Brassica carinata HOM05D010326 ORTHO05D012728 2.5e-10 70.5 140 29.3
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 2.5e-10 70.5 285 20.7
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 2.5e-10 70.5 210 28.6
AT3G19790 Arabidopsis thaliana HOM05D006735 ORTHO05D009558 4.3e-10 69.7 57 52.6
BcaC01g01289 Brassica carinata HOM05D010326 ORTHO05D012728 5.6e-10 69.3 144 29.9
CSS0024057 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.6e-10 69.3 285 22.8
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 5.6e-10 69.3 136 27.9
MD12G1140100 Malus domestica HOM05D002354 ORTHO05D002469 5.6e-10 69.3 136 27.9
BraA10t42960Z Brassica rapa HOM05D006735 ORTHO05D009558 9.5e-10 68.6 89 34.8
CiPaw.04G143900 Carya illinoinensis HOM05D000876 ORTHO05D000285 9.5e-10 68.6 133 27.8
AUR62009858 Chenopodium quinoa HOM05D000034 ORTHO05D000037 9.5e-10 68.6 138 26.1
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 1.2e-09 68.2 195 28.7
arahy.Tifrunner.gnm1.ann1.X5RLQI Arachis hypogaea HOM05D000034 ORTHO05D000285 2.1e-09 67.4 135 28.1
CSS0014704 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 2.1e-09 67.4 285 22.8
Carub.0003s1967 Capsella rubella HOM05D006735 ORTHO05D009558 2.8e-09 67.0 77 39.0
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 2.8e-09 67.0 212 23.6
CSS0005143 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 4.7e-09 66.2 225 27.1
CSS0015075 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 4.7e-09 66.2 285 22.5
Os03g0814800 Oryza sativa ssp. japonica HOM05D000876 ORTHO05D000285 4.7e-09 66.2 123 30.1
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 6.1e-09 65.9 283 20.8
BcaC01g01277 Brassica carinata HOM05D006735 ORTHO05D009558 6.1e-09 65.9 170 30.0
BraA05t19380Z Brassica rapa HOM05D012682 ORTHO05D014126 6.1e-09 65.9 105 33.3
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 8.0e-09 65.5 292 20.5
Glyma.05G069200 Glycine max HOM05D000876 ORTHO05D000285 8.0e-09 65.5 195 28.2
Os12g0207200 Oryza sativa ssp. japonica HOM05D000876 ORTHO05D000285 8.0e-09 65.5 134 25.4
arahy.Tifrunner.gnm1.ann1.2911W9 Arachis hypogaea HOM05D000876 ORTHO05D000285 1.0e-08 65.1 135 27.4
CSS0005680 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 1.0e-08 65.1 291 23.4
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 1.0e-08 65.1 124 32.3
CSS0014901 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.4e-08 64.7 229 27.9
CSS0018277 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.8e-08 64.3 126 31.0
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 1.8e-08 64.3 212 26.9
Sp5g35140 Schrenkiella parvula HOM05D006735 ORTHO05D009558 1.8e-08 64.3 102 33.3
arahy.Tifrunner.gnm1.ann1.AG0B9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 2.3e-08 63.9 135 27.4
A02p43840 Brassica napus HOM05D012420 ORTHO05D019981 3.0e-08 63.5 199 29.1
AL3G33240 Arabidopsis lyrata HOM05D006735 ORTHO05D009558 4.0e-08 63.2 57 47.4
CSS0031319 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.2e-08 62.8 208 27.9
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 8.9e-08 62.0 135 26.7
BolC9t55302H Brassica oleracea HOM05D006735 ORTHO05D009558 8.9e-08 62.0 67 40.3
AL5G17530 Arabidopsis lyrata HOM05D008982 ORTHO05D011553 1.5e-07 61.2 145 26.9
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 1.5e-07 61.2 286 24.8
BcaNung01756 Brassica carinata HOM05D015886 ORTHO05D017549 2.0e-07 60.8 214 24.8
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 2.0e-07 60.8 280 22.5
Aa31LG3G5580 Aethionema arabicum HOM05D010326 ORTHO05D012728 3.4e-07 60.1 269 23.4
CSS0036694 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 3.4e-07 60.1 130 28.5
AUR62033764 Chenopodium quinoa HOM05D000876 ORTHO05D000285 3.4e-07 60.1 201 23.9
Thhalv10022056m.g Eutrema salsugineum HOM05D006735 ORTHO05D009558 4.4e-07 59.7 56 50.0
C06p13880 Brassica napus HOM05D006735 ORTHO05D009558 5.7e-07 59.3 133 37.6
BolC4t23000H Brassica oleracea HOM05D006735 ORTHO05D041910 5.7e-07 59.3 58 53.4
CSS0013298 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.7e-07 59.3 204 26.5
CSS0039704 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.7e-07 59.3 223 26.5
AUR62020810 Chenopodium quinoa HOM05D000034 ORTHO05D000037 5.7e-07 59.3 137 25.5
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 5.7e-07 59.3 249 22.5
Sed0005915 Sechium edule HOM05D000876 ORTHO05D000285 5.7e-07 59.3 286 21.7
AT1G80625 Arabidopsis thaliana HOM05D006735 ORTHO05D009558 7.5e-07 58.9 90 32.2
CSS0027195 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 7.5e-07 58.9 121 31.4
AL2G13740 Arabidopsis lyrata HOM05D010326 ORTHO05D012728 9.8e-07 58.5 79 34.2
MBI04_g27247_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000285 9.8e-07 58.5 279 22.2
FAN19G0003 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.3e-06 58.2 141 27.0
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 1.3e-06 58.2 278 22.3
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 1.3e-06 58.2 278 22.3
Carub.0008s0764 Capsella rubella HOM05D010326 ORTHO05D033154 1.7e-06 57.8 79 30.4
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 1.7e-06 57.8 141 26.2
FAN20G0415 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.7e-06 57.8 145 25.5
BcaC01g00738 Brassica carinata HOM05D012420 ORTHO05D019981 2.2e-06 57.4 199 28.1
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.9e-06 57.0 141 26.2
Thhalv10002194m.g Eutrema salsugineum HOM05D006735 ORTHO05D011963 3.7e-06 56.6 168 24.4
FAN10G2856 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.7e-06 56.6 141 26.2
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 4.9e-06 56.2 121 28.1
arahy.Tifrunner.gnm1.ann1.R6BV2D Arachis hypogaea HOM05D000876 ORTHO05D000285 4.9e-06 56.2 98 31.6
FAN11G2191 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 141 26.2
GSVIVG01023166001 Vitis vinifera HOM05D007516 ORTHO05D000285 4.9e-06 56.2 281 20.6
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 6.4e-06 55.8 126 27.8
FAN09G3146 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.4e-06 55.8 147 25.2
FAN09G3305 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.4e-06 55.8 147 25.2
FAN23G0726 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.4e-06 55.8 128 26.6
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 6.4e-06 55.8 299 23.7
QL01p024703 Quercus lobata HOM05D000876 ORTHO05D000285 8.3e-06 55.5 133 27.8


User provided reference genes

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