Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 0.0e+00 1102.8 600 100.0
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 0.0e+00 1102.8 600 100.0
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.3e-287 992.6 614 91.4
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 4.1e-286 987.6 614 91.0
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 2.2e-271 938.7 615 83.9
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.0e-268 929.9 615 82.9
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 8.6e-268 926.8 612 83.0
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.2e-266 922.9 616 82.6
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.8e-265 919.1 613 80.8
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 6.8e-265 917.1 614 81.9
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 3.3e-251 871.7 631 82.4
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.4e-217 760.0 616 68.5
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 3.4e-216 755.4 623 66.8
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 3.6e-165 585.9 625 56.3
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 7.7e-160 568.2 614 55.9
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.2e-159 566.6 616 55.4
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.0e-159 565.5 616 55.7
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.5e-158 563.9 614 55.5
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 3.2e-158 562.8 620 53.2
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 9.4e-158 561.2 624 52.2
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.1e-157 560.1 618 54.7
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.8e-156 557.0 619 52.8
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 6.8e-156 555.1 625 55.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.3e-154 550.8 620 54.4
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.4e-153 546.6 616 52.6
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 1.3e-146 524.2 612 51.5
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 7.0e-145 518.5 624 51.6
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.0e-143 514.6 626 50.8
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.7e-143 513.8 650 48.8
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 6.6e-143 511.9 628 50.2
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 5.6e-142 508.8 621 49.1
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.2e-141 507.7 638 49.1
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.0e-140 504.6 640 50.5
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 2.3e-140 503.4 630 50.2
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 6.8e-140 501.9 617 49.3
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 2.6e-139 500.0 626 48.9
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 4.4e-139 499.2 623 50.4
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 9.8e-139 498.0 623 48.3
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.7e-138 496.1 617 48.6
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.4e-137 494.2 614 49.2
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.6e-136 490.7 614 49.0
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.7e-136 490.0 631 47.9
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.9e-135 486.1 575 51.5
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.9e-135 486.1 621 48.0
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.3e-134 481.9 617 48.0
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 9.5e-134 481.5 613 48.1
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 1.6e-133 480.7 633 49.4
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.4e-132 477.6 613 47.6
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 6.8e-132 475.3 635 45.8
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.3e-130 471.1 626 51.4
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 1.7e-130 470.7 685 44.7
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.4e-129 467.6 620 48.5
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 1.6e-128 464.2 618 48.1
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 4.6e-128 462.6 566 53.0
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 4.6e-128 462.6 629 49.8
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 6.0e-128 462.2 623 46.7
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.9e-126 457.2 718 41.5
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.2e-125 454.5 640 43.4
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 2.8e-125 453.4 629 45.6
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 4.7e-125 452.6 617 45.9
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.4e-124 451.1 718 41.5
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.2e-123 448.0 586 48.3
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 2.0e-123 447.2 614 47.6
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 2.2e-122 443.7 613 48.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 3.7e-122 443.0 626 45.0
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.9e-121 440.7 590 49.3
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 3.2e-121 439.9 617 46.7
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 3.2e-121 439.9 634 45.7
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.6e-120 437.6 669 43.0
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 4.6e-120 436.0 632 44.3
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.7e-119 434.1 623 47.8
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 2.3e-119 433.7 673 42.6
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 6.6e-119 432.2 549 50.6
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 6.6e-119 432.2 643 45.4
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.1e-118 431.4 625 44.8
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 3.1e-116 423.3 514 49.4
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 4.9e-114 416.0 634 45.0
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 3.2e-113 413.3 620 45.6
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.6e-112 411.0 620 45.5
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.3e-111 407.9 638 42.6
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 9.6e-110 401.7 678 40.0
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 9.6e-110 401.7 678 40.0
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.1e-109 400.6 620 41.8
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.8e-109 400.2 634 42.1
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 1.1e-108 398.3 486 50.0
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 4.9e-106 389.4 604 43.5
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 6.4e-106 389.0 635 42.5
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 5.3e-100 369.4 578 44.8
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 5.8e-99 365.9 450 48.2
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 9.9e-99 365.2 651 38.1
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.0e-95 355.1 621 43.5
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 8.7e-95 352.1 620 43.4
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.3e-93 348.2 618 40.5
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 4.8e-93 346.3 634 42.1
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 1.5e-91 341.3 621 39.6
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 2.6e-91 340.5 611 39.3
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 3.8e-90 336.7 623 41.4
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 3.5e-88 330.1 614 42.0
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.3e-87 328.2 421 50.8
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 8.2e-85 318.9 565 37.9
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 9.7e-78 295.4 414 42.3
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 4.8e-77 293.1 526 39.2
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 6.9e-76 289.3 541 39.6
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.1e-70 271.9 354 45.8
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.4e-65 255.0 301 47.8
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 6.1e-64 249.6 176 86.4
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 6.5e-58 229.6 185 74.1
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 4.1e-52 210.3 242 52.1
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.3e-45 188.7 125 79.2
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 9.1e-44 182.6 497 29.8
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 7.7e-43 179.5 139 64.7
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 4.0e-39 167.2 277 37.2
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 6.8e-39 166.4 479 30.9
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.4e-36 158.7 173 49.7
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.2e-33 147.1 113 64.6
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.7e-32 143.7 166 48.2
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.9e-31 139.4 127 56.7
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 3.4e-30 137.5 277 32.5
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.4e-28 132.1 526 27.9
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.3e-26 125.6 504 25.4
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 6.6e-26 123.2 97 64.9
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.9e-25 121.7 176 46.0
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 2.8e-24 117.9 155 47.7
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.3e-23 114.8 291 36.4
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 6.8e-23 113.2 72 77.8
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.2e-22 112.5 82 63.4
C03p60220 Brassica napus HOM05D055775 ORTHO05D041469 2.9e-21 107.8 183 57.9
BolC3t18284H Brassica oleracea HOM05D055775 ORTHO05D041469 2.9e-21 107.8 183 57.9
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 1.9e-17 95.1 591 22.3
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.6e-16 92.0 497 25.4
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 6.2e-16 90.1 147 44.2
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 2.0e-14 85.1 87 51.7
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 1.3e-13 82.4 66 72.7
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.9e-12 78.6 137 42.3
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.0e-10 71.2 98 43.9
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.3e-09 67.8 73 53.4
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.6e-08 65.5 150 45.3
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 2.8e-08 64.7 111 36.0


User provided reference genes

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