Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.0e-88 330.1 176 100.0
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.0e-88 330.1 176 100.0
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.1e-77 292.0 168 95.2
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 3.1e-77 292.0 168 95.2
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 9.1e-77 290.4 168 95.2
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 1.6e-68 263.1 156 93.6
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.5e-66 256.5 168 86.3
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 4.4e-63 245.0 168 84.5
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.1e-61 240.4 172 79.1
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 9.5e-58 227.3 169 76.9
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 2.0e-55 219.5 170 76.5
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 3.4e-55 218.8 173 75.7
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 4.9e-54 214.9 172 73.8
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 4.9e-54 214.9 168 75.6
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.8e-53 213.0 172 72.7
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.2e-52 210.3 171 73.7
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.5e-50 203.4 169 73.4
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 5.6e-50 201.4 171 73.7
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 3.1e-48 195.7 170 71.8
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 8.9e-48 194.1 169 69.2
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 8.9e-48 194.1 172 68.0
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 2.2e-46 189.5 170 68.8
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.8e-32 143.3 185 56.2
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 7.6e-31 137.9 190 51.1
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.7e-30 136.7 188 53.2
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.8e-30 135.6 189 54.0
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 6.0e-28 128.3 192 48.4
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.7e-27 126.7 190 48.9
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 8.1e-25 117.9 175 46.9
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-24 116.3 180 47.8
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-24 116.3 178 46.1
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-24 116.3 180 47.8
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 2.4e-24 116.3 178 46.1
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 2.4e-24 116.3 180 47.8
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 4.9e-22 108.6 171 42.7
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 8.4e-22 107.8 168 42.9
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 8.4e-22 107.8 172 44.8
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 4.6e-20 102.1 169 44.4
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.0e-20 101.7 148 43.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.3e-19 99.8 173 42.8
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 5.1e-19 98.6 169 41.4
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.1e-18 97.4 171 41.5
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.5e-18 97.1 197 39.1
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 4.3e-18 95.5 186 39.8
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 4.3e-18 95.5 197 37.6
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 9.6e-18 94.4 188 38.8
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 9.6e-18 94.4 170 39.4
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.3e-17 94.0 172 43.0
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.3e-17 94.0 209 36.8
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.6e-17 93.6 172 40.7
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.6e-17 93.6 186 39.2
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.1e-17 93.2 148 46.6
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 6.2e-17 91.7 197 35.0
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 8.1e-17 91.3 161 41.0
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.4e-16 90.5 203 34.0
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.8e-16 90.1 149 41.6
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.8e-16 90.1 162 40.7
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.4e-16 89.7 172 40.1
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.4e-16 89.7 172 40.1
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 2.4e-16 89.7 152 40.8
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 3.1e-16 89.4 157 39.5
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 3.1e-16 89.4 76 60.5
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 4.0e-16 89.0 198 35.4
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 4.0e-16 89.0 207 37.7
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 4.0e-16 89.0 169 36.1
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 5.3e-16 88.6 159 40.9
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.6e-15 86.3 188 34.6
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.6e-15 86.3 157 38.9
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 2.6e-15 86.3 193 35.2
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.6e-15 86.3 152 40.1
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.6e-15 86.3 169 37.3
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 4.5e-15 85.5 203 33.0
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.5e-15 85.5 172 38.4
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 4.5e-15 85.5 161 37.3
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 4.5e-15 85.5 150 41.3
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.3e-14 84.0 151 40.4
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.7e-14 83.6 197 34.0
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.2e-14 83.2 168 38.1
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 2.2e-14 83.2 197 36.0
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.8e-14 82.4 159 37.1
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 4.9e-14 82.0 166 38.6
A10p22240 Brassica napus HOM05D004299 ORTHO05D003557 6.4e-14 81.6 63 73.0
BraA10t44283Z Brassica rapa HOM05D004299 ORTHO05D003557 6.4e-14 81.6 63 73.0
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 6.4e-14 81.6 161 38.5
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 8.4e-14 81.3 108 46.3
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.1e-13 80.9 201 36.3
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.1e-13 80.9 136 38.2
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.4e-13 80.5 160 38.1
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.9e-13 80.1 156 39.1
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.9e-13 80.1 208 34.1
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.9e-13 80.1 75 56.0
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.4e-13 79.7 185 36.8
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 3.2e-13 79.3 180 36.1
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 3.2e-13 79.3 159 37.1
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 4.2e-13 79.0 196 36.7
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 5.4e-13 78.6 159 36.5
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.1e-13 78.2 191 36.6
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 9.3e-13 77.8 194 35.1
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 9.3e-13 77.8 187 36.9
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.6e-12 77.0 202 36.1
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 2.1e-12 76.6 193 33.7
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.1e-12 76.6 187 36.9
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.7e-12 76.3 173 35.8
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 2.7e-12 76.3 132 43.9
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 2.7e-12 76.3 200 32.5
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 3.5e-12 75.9 187 34.8
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 3.5e-12 75.9 176 37.5
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 4.6e-12 75.5 174 37.4
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.0e-12 75.1 159 35.2
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 7.9e-12 74.7 195 37.4
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 1.8e-11 73.6 156 37.2
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.8e-11 73.6 94 46.8
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.3e-11 73.2 191 35.1
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.0e-11 72.8 143 39.9
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 3.0e-11 72.8 203 36.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 3.0e-11 72.8 180 33.9
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 3.0e-11 72.8 176 38.1
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 3.0e-11 72.8 117 40.2
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 5.1e-11 72.0 129 38.0
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.1e-10 70.9 178 34.8
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 1.5e-10 70.5 150 39.3
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 3.3e-10 69.3 104 48.1
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 4.3e-10 68.9 152 40.1
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 4.3e-10 68.9 192 33.9
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 7.4e-10 68.2 195 33.8
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 9.6e-10 67.8 172 33.1
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 1.3e-09 67.4 97 45.4
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 2.8e-09 66.2 205 33.2
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.8e-09 65.5 172 35.5
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 6.2e-09 65.1 64 56.2
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 6.2e-09 65.1 196 32.7
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 8.1e-09 64.7 117 38.5
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.1e-08 64.3 196 31.1
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 2.4e-08 63.2 92 44.6
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 3.1e-08 62.8 163 35.0
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 3.1e-08 62.8 43 67.4
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 5.3e-08 62.0 39 76.9
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 5.3e-08 62.0 110 40.9
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 5.3e-08 62.0 110 41.8
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.2e-07 60.8 184 31.5
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 1.2e-07 60.8 92 47.8
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.2e-07 60.8 86 48.8
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.5e-07 60.5 184 33.7
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.0e-07 60.1 189 31.2
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 4.5e-07 58.9 180 32.8
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 2.2e-06 56.6 77 40.3
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 2.2e-06 56.6 155 31.6
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 2.9e-06 56.2 34 73.5
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 3.8e-06 55.8 78 38.5
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 4.9e-06 55.5 44 61.4
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 6.4e-06 55.1 121 34.7
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 8.4e-06 54.7 54 53.7
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 8.4e-06 54.7 54 53.7


User provided reference genes

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