Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.4e-122 443.0 223 100.0
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 8.5e-112 407.1 221 94.1
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 5.7e-108 394.4 217 94.0
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 3.8e-80 302.0 162 93.2
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 8.5e-80 300.8 162 93.8
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 1.8e-74 283.1 223 69.1
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 5.4e-74 281.6 223 69.5
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 5.4e-74 281.6 223 69.5
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 2.7e-73 279.3 223 68.6
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 2.7e-73 279.3 223 68.6
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 1.0e-72 277.3 223 68.6
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.0e-72 277.3 223 69.5
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.0e-72 277.3 223 69.5
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 1.0e-72 277.3 223 69.5
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 1.0e-72 277.3 223 69.5
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.0e-72 277.3 223 69.5
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.3e-72 276.9 223 68.2
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.7e-72 276.6 223 68.2
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 2.9e-72 275.8 223 68.2
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 6.6e-72 274.6 217 69.1
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 8.6e-72 274.2 223 69.1
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.1e-71 273.9 223 67.7
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 3.3e-71 272.3 223 67.7
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 3.6e-70 268.9 216 68.1
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.7e-67 260.0 217 64.1
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 2.9e-67 259.2 223 62.8
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 4.9e-67 258.5 217 64.5
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 8.3e-67 257.7 225 61.8
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 8.3e-67 257.7 217 63.1
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 8.3e-67 257.7 217 63.1
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.1e-66 257.3 223 61.9
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.4e-66 256.9 216 63.4
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 1.4e-66 256.9 217 63.1
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.8e-66 256.5 217 63.1
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 2.4e-66 256.1 217 62.7
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 4.1e-66 255.4 223 61.9
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 4.1e-66 255.4 217 63.6
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.1e-66 255.4 223 61.9
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 4.1e-66 255.4 223 61.9
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 5.4e-66 255.0 217 63.6
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 7.0e-66 254.6 217 62.2
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 7.0e-66 254.6 217 63.6
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 7.0e-66 254.6 217 63.6
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 7.0e-66 254.6 217 62.2
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 9.2e-66 254.2 216 63.4
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 9.2e-66 254.2 216 63.4
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 9.2e-66 254.2 216 63.4
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 9.2e-66 254.2 217 63.1
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 1.6e-65 253.4 217 63.1
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.0e-65 253.1 214 62.6
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 2.0e-65 253.1 216 62.0
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.0e-65 253.1 217 62.2
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 2.0e-65 253.1 217 63.1
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 2.7e-65 252.7 217 62.7
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 2.7e-65 252.7 218 61.0
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 3.5e-65 252.3 214 63.6
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 3.5e-65 252.3 223 61.9
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 4.6e-65 251.9 217 62.2
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 4.6e-65 251.9 217 62.2
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 4.6e-65 251.9 217 63.1
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 4.6e-65 251.9 218 61.9
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.6e-65 251.9 223 61.4
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 4.6e-65 251.9 217 61.3
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 4.6e-65 251.9 216 62.5
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 5.9e-65 251.5 223 61.0
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 5.9e-65 251.5 220 61.4
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.9e-65 251.5 217 62.7
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 5.9e-65 251.5 217 61.8
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 7.8e-65 251.1 216 62.5
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 7.8e-65 251.1 216 62.5
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.8e-65 251.1 217 62.2
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 7.8e-65 251.1 217 62.7
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 7.8e-65 251.1 217 62.7
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 7.8e-65 251.1 216 62.0
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 7.8e-65 251.1 217 61.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.0e-64 250.8 216 62.0
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.0e-64 250.8 216 62.0
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.0e-64 250.8 217 62.2
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.0e-64 250.8 217 61.8
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 1.3e-64 250.4 217 61.3
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.3e-64 250.4 217 62.2
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.3e-64 250.4 217 61.8
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.7e-64 250.0 217 61.8
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 1.7e-64 250.0 217 62.2
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 2.3e-64 249.6 217 61.3
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 2.3e-64 249.6 217 61.3
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 3.0e-64 249.2 223 60.1
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 3.0e-64 249.2 217 61.8
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 3.9e-64 248.8 216 62.5
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 5.0e-64 248.4 217 61.3
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 5.0e-64 248.4 217 60.8
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 6.6e-64 248.1 217 62.2
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 1.1e-63 247.3 217 61.3
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 1.1e-63 247.3 215 60.9
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 1.1e-63 247.3 217 61.8
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.1e-63 247.3 217 60.8
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.5e-63 246.9 217 60.8
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 1.5e-63 246.9 217 61.3
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.5e-63 246.9 217 61.3
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 1.5e-63 246.9 217 61.8
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.5e-63 246.9 216 61.6
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 1.9e-63 246.5 215 61.9
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.3e-63 245.7 223 59.2
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 4.3e-63 245.4 216 61.1
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 4.3e-63 245.4 218 60.6
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 4.3e-63 245.4 220 60.5
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 5.6e-63 245.0 216 60.2
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 5.6e-63 245.0 217 59.9
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 5.6e-63 245.0 218 60.6
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 7.3e-63 244.6 215 61.9
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 9.5e-63 244.2 217 60.4
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 1.6e-62 243.4 217 59.9
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.2e-62 241.5 214 61.2
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 6.2e-62 241.5 218 59.2
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 1.0e-61 240.7 215 60.0
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 1.8e-61 240.0 218 57.8
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 2.2e-59 233.0 283 49.1
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.9e-59 231.9 206 60.7
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 6.4e-59 231.5 225 56.0
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 3.2e-58 229.2 214 57.9
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 7.0e-58 228.0 220 56.8
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 2.7e-57 226.1 120 90.0
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.5e-55 220.3 126 84.1
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 1.9e-55 219.9 209 59.3
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 3.3e-55 219.2 215 55.3
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 4.3e-55 218.8 147 75.5
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 4.3e-55 218.8 202 58.9
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 5.6e-55 218.4 217 55.8
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 9.5e-55 217.6 147 74.8
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 9.5e-55 217.6 126 82.5
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.8e-53 213.4 208 56.7
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.3e-51 207.2 209 54.5
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 8.3e-51 204.5 209 54.1
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 1.1e-50 204.1 223 56.1
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.4e-50 203.0 116 82.8
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 1.5e-47 193.7 208 51.4
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 4.3e-47 192.2 99 100.0
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.1e-46 189.9 207 56.5
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 1.1e-39 167.5 115 70.4
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.6e-38 163.7 211 42.2
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.9e-37 158.3 93 81.7
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.5e-36 157.1 156 60.3
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 2.0e-36 156.8 85 87.1
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.2e-25 120.9 198 38.4
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 2.7e-25 119.8 156 45.5
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 6.7e-24 115.2 120 48.3
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 9.9e-20 101.3 51 100.0
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 6.4e-19 98.6 200 35.5
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 7.1e-18 95.1 58 79.3
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 3.9e-16 89.4 128 42.2
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 5.5e-10 68.9 42 81.0
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.0e-09 65.5 42 73.8
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 1.8e-08 63.9 49 61.2
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.8e-08 63.9 43 74.4
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 3.0e-08 63.2 41 75.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 5.1e-08 62.4 41 78.0
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.9e-07 60.5 37 78.4
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 4.3e-07 59.3 126 36.5
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 4.3e-07 59.3 50 66.0
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.8e-06 56.6 41 70.7


User provided reference genes

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