Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p59780 Brassica napus HOM05D001756 ORTHO05D001581 3.1e-60 235.0 119 100.0
BolC3t18241H Brassica oleracea HOM05D001756 ORTHO05D001581 1.5e-30 136.3 119 66.4
BcaC01g02826 Brassica carinata HOM05D001756 ORTHO05D001581 5.7e-30 134.4 119 64.7
A06p32720 Brassica napus HOM05D001756 ORTHO05D001581 2.1e-29 132.5 119 63.9
BraA06t26202Z Brassica rapa HOM05D001756 ORTHO05D001581 2.1e-29 132.5 119 63.9
BcaB02g09903 Brassica carinata HOM05D001756 ORTHO05D001581 3.5e-24 115.2 116 57.8
Sp2g28960 Schrenkiella parvula HOM05D001756 ORTHO05D001581 6.7e-23 110.9 116 55.2
BcaC03g18360 Brassica carinata HOM05D001756 ORTHO05D001581 1.3e-21 106.7 116 54.3
C02p64360 Brassica napus HOM05D001756 ORTHO05D001581 1.3e-21 106.7 116 54.3
Carub.0008s2676 Capsella rubella HOM05D001756 ORTHO05D001581 1.6e-21 106.3 117 54.7
BolC2t12500H Brassica oleracea HOM05D001756 ORTHO05D001581 3.7e-21 105.1 116 53.4
A02p44100 Brassica napus HOM05D001756 ORTHO05D001581 6.3e-21 104.4 116 53.4
BraA02t09333Z Brassica rapa HOM05D001756 ORTHO05D001581 6.3e-21 104.4 116 53.4
AL334U10030 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 1.1e-20 103.6 116 52.6
AL8G43592 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 1.1e-20 103.6 116 52.6
Thhalv10005224m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 6.9e-20 100.9 116 52.6
AT5G65870 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 3.8e-18 95.1 116 51.7
CARHR279870 Cardamine hirsuta HOM05D001756 ORTHO05D001581 7.2e-17 90.9 116 50.9
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 5.9e-11 71.2 118 42.4
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 5.9e-11 71.2 118 42.4
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 1.7e-10 69.7 118 44.1
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 2.9e-10 68.9 118 44.9
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 5.0e-10 68.2 118 43.2
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 6.5e-10 67.8 116 44.8
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 3.2e-09 65.5 33 87.9
C01p30590 Brassica napus HOM05D001756 ORTHO05D001581 5.5e-09 64.7 118 43.2
BolC1t02995H Brassica oleracea HOM05D001756 ORTHO05D001581 5.5e-09 64.7 118 43.2
A01p24530 Brassica napus HOM05D001756 ORTHO05D001581 1.2e-08 63.5 118 42.4
BraA01t02363Z Brassica rapa HOM05D001756 ORTHO05D001581 1.2e-08 63.5 118 42.4
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 1.6e-08 63.2 118 40.7
FvH4_2g32750 Fragaria vesca HOM05D001756 ORTHO05D001581 1.6e-08 63.2 38 76.3
FAN24G1728 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.6e-08 63.2 38 76.3
Glyma.17G159000 Glycine max HOM05D001756 ORTHO05D001581 1.6e-08 63.2 64 50.0
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 1.6e-08 63.2 113 44.2
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 1.6e-08 63.2 111 44.1
BcaC09g49971 Brassica carinata HOM05D001756 ORTHO05D001581 2.1e-08 62.8 33 87.9
Ca_24672_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 2.7e-08 62.4 38 73.7
Ca_30012_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 2.7e-08 62.4 38 73.7
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 3.6e-08 62.0 117 42.7
AL5G29770 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 4.7e-08 61.6 116 42.2
AT3G49780 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 4.7e-08 61.6 116 42.2
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 4.7e-08 61.6 68 51.5
Gohir.A02G150100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 4.7e-08 61.6 39 71.8
Gohir.D03G030200 Gossypium hirsutum HOM05D001756 ORTHO05D001581 4.7e-08 61.6 39 71.8
Gorai.003G031900 Gossypium raimondii HOM05D001756 ORTHO05D001581 4.7e-08 61.6 39 71.8
Glyma.11G046000 Glycine max HOM05D001756 ORTHO05D001581 7.9e-08 60.8 41 68.3
BcaB05g23153 Brassica carinata HOM05D001756 ORTHO05D001581 1.0e-07 60.5 108 40.7
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 1.0e-07 60.5 118 41.5
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 1.0e-07 60.5 115 37.4
FAN15G0430 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.4e-07 60.1 38 73.7
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.8e-07 59.7 37 73.0
CAN.G606.70 Capsicum annuum HOM05D001756 ORTHO05D001581 1.8e-07 59.7 119 38.7
FAN20G0846 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.8e-07 59.7 38 73.7
FAN27G1437 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.8e-07 59.7 38 73.7
PGSC0003DMG400004941 Solanum tuberosum HOM05D001756 ORTHO05D001581 1.8e-07 59.7 121 39.7
CSS0048277 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.3e-07 59.3 41 68.3
CSS0049317 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.3e-07 59.3 41 68.3
Glyma.01G195700 Glycine max HOM05D001756 ORTHO05D001581 2.3e-07 59.3 43 62.8
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.3e-07 59.3 115 36.5
RcHm_v2.0_Chr6g0309921 Rosa chinensis HOM05D001756 ORTHO05D001581 2.3e-07 59.3 38 71.1
ATR0739G092 Amborella trichopoda HOM05D001756 ORTHO05D001581 3.0e-07 58.9 38 71.1
Glyma.05G107800 Glycine max HOM05D001756 ORTHO05D001581 3.0e-07 58.9 64 48.4
Peaxi162Scf00340g00059 Petunia axillaris HOM05D001756 ORTHO05D001581 3.0e-07 58.9 119 38.7
Peaxi162Scf00340g00412 Petunia axillaris HOM05D001756 ORTHO05D001581 3.0e-07 58.9 119 38.7
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 3.9e-07 58.5 39 66.7
Gohir.A06G025000 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.9e-07 58.5 38 68.4
Gohir.D06G022100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.9e-07 58.5 38 68.4
Gorai.010G026700 Gossypium raimondii HOM05D001756 ORTHO05D001581 3.9e-07 58.5 38 68.4
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 3.9e-07 58.5 34 79.4
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 3.9e-07 58.5 38 73.7
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 5.1e-07 58.2 115 37.4
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 6.7e-07 57.8 113 40.7
PGR004G0933 Punica granatum HOM05D001756 ORTHO05D001581 6.7e-07 57.8 45 64.4
Glyma.10G255800 Glycine max HOM05D001756 ORTHO05D001581 8.8e-07 57.4 31 80.6
Glyma.20G135700 Glycine max HOM05D001756 ORTHO05D001581 8.8e-07 57.4 31 80.6
Hund13962 Selenicereus undatus HOM05D001756 ORTHO05D001581 8.8e-07 57.4 33 75.8
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.1e-06 57.0 116 41.4
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 1.1e-06 57.0 35 77.1
Solyc04g077580.3 Solanum lycopersicum HOM05D001756 ORTHO05D001581 1.1e-06 57.0 121 38.0
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 1.1e-06 57.0 32 78.1
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 1.5e-06 56.6 31 77.4
MD05G1105500 Malus domestica HOM05D001756 ORTHO05D001581 1.5e-06 56.6 116 35.3
TWI74G0998 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 1.5e-06 56.6 115 36.5
Cc02_g20030 Coffea canephora HOM05D001756 ORTHO05D001581 2.0e-06 56.2 119 37.0
Lsat_1_v5_gn_2_80201 Lactuca sativa HOM05D001756 ORTHO05D001581 2.0e-06 56.2 32 81.2
MBI16_g27034_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 2.0e-06 56.2 36 72.2
PGR142G2395 Punica granatum HOM05D001756 ORTHO05D001581 2.0e-06 56.2 115 34.8
SEGI_09910 Sequoiadendron giganteum HOM05D001756 ORTHO05D001581 2.0e-06 56.2 44 63.6
Sopen04g031220 Solanum pennellii HOM05D001756 ORTHO05D001581 2.0e-06 56.2 121 38.0
PGSC0003DMG400025738 Solanum tuberosum HOM05D001756 ORTHO05D001581 2.0e-06 56.2 119 37.8
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 2.0e-06 56.2 115 40.9
CSS0014839 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.6e-06 55.8 119 35.3
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.6e-06 55.8 34 73.5
CSS0047712 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.6e-06 55.8 119 35.3
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.6e-06 55.8 35 74.3
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 2.6e-06 55.8 115 40.0
Cc07_g07320 Coffea canephora HOM05D001756 ORTHO05D001581 3.3e-06 55.5 36 72.2
FvH4_2g03340 Fragaria vesca HOM05D001756 ORTHO05D001581 3.3e-06 55.5 32 78.1
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.3e-06 55.5 32 78.1
Nitab4.5_0009491g0020 Nicotiana tabacum HOM05D001756 ORTHO05D001581 3.3e-06 55.5 119 38.7
Prupe.8G150200 Prunus persica HOM05D001756 ORTHO05D001581 3.3e-06 55.5 32 78.1
RcHm_v2.0_Chr6g0248481 Rosa chinensis HOM05D001756 ORTHO05D001581 3.3e-06 55.5 32 78.1
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 4.4e-06 55.1 113 37.2
ECA232G1256 Erigeron canadensis HOM05D000549 ORTHO05D008331 4.4e-06 55.1 32 75.0
Gohir.A11G212500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 4.4e-06 55.1 34 70.6
Lalb_Chr09g0323711 Lupinus albus HOM05D001756 ORTHO05D001581 4.4e-06 55.1 37 64.9
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 4.4e-06 55.1 37 73.0
Manes.12G117100 Manihot esculenta HOM05D001756 ORTHO05D001581 4.4e-06 55.1 32 75.0
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 4.4e-06 55.1 35 71.4
Manes.18G048700 Manihot esculenta HOM05D001756 ORTHO05D001581 4.4e-06 55.1 38 73.7
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 4.4e-06 55.1 31 77.4
Rhsim06G0064200 Rhododendron simsii HOM05D001756 ORTHO05D001581 4.4e-06 55.1 35 68.6
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 4.4e-06 55.1 35 71.4
TWI59G0044 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 4.4e-06 55.1 31 77.4
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 4.4e-06 55.1 30 83.3
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.7e-06 54.7 113 40.7
CsaV3_6G044290 Cucumis sativus L. HOM05D001756 ORTHO05D001581 5.7e-06 54.7 31 74.2
ECA246G3808 Erigeron canadensis HOM05D001756 ORTHO05D001581 5.7e-06 54.7 116 37.9
Eucgr.I00676 Eucalyptus grandis HOM05D001756 ORTHO05D001581 5.7e-06 54.7 36 72.2
Gohir.D11G210700 Gossypium hirsutum HOM05D001756 ORTHO05D001581 5.7e-06 54.7 33 72.7
Gorai.007G226000 Gossypium raimondii HOM05D001756 ORTHO05D001581 5.7e-06 54.7 33 72.7
DCAR_028523 Daucus carota HOM05D001756 ORTHO05D001581 7.4e-06 54.3 40 65.0
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 7.4e-06 54.3 31 74.2
HanXRQChr12g0376281 Helianthus annuus HOM05D001756 ORTHO05D001581 7.4e-06 54.3 32 78.1
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 7.4e-06 54.3 35 71.4
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 7.4e-06 54.3 35 71.4
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 7.4e-06 54.3 35 68.6
Nitab4.5_0001099g0060 Nicotiana tabacum HOM05D001756 ORTHO05D001581 7.4e-06 54.3 119 38.7
Peaxi162Scf00016g03021 Petunia axillaris HOM05D001756 ORTHO05D001581 7.4e-06 54.3 35 68.6
Phvul.003G233400 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 7.4e-06 54.3 37 62.2
Phvul.007G047000 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 7.4e-06 54.3 31 74.2
EL10Ac6g15597 Beta vulgaris HOM05D001756 ORTHO05D001581 9.7e-06 53.9 31 77.4
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 9.7e-06 53.9 31 80.6
ClCG01G017770 Citrullus lanatus HOM05D001756 ORTHO05D001581 9.7e-06 53.9 34 67.6
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 9.7e-06 53.9 31 80.6
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 9.7e-06 53.9 35 71.4
Lalb_Chr08g0245221 Lupinus albus HOM05D001756 ORTHO05D001581 9.7e-06 53.9 37 64.9
MBI16_g16475_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 9.7e-06 53.9 31 77.4
MBI16_g32087_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 9.7e-06 53.9 31 77.4
PGR042G3192 Punica granatum HOM05D001756 ORTHO05D001581 9.7e-06 53.9 35 68.6
TWI23G1082 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 9.7e-06 53.9 31 74.2
vmacro01948 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 9.7e-06 53.9 32 75.0


User provided reference genes

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