Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p59700 Brassica napus HOM05D007502 ORTHO05D011692 1.8e-171 605.9 318 100.0
BolC3t18232H Brassica oleracea HOM05D007502 ORTHO05D011692 1.8e-171 605.9 318 100.0
BraA06t26210Z Brassica rapa HOM05D007502 ORTHO05D011692 6.6e-142 507.7 319 88.1
A06p32780 Brassica napus HOM05D007502 ORTHO05D011692 3.4e-130 468.8 307 84.4
BcaB02g09909 Brassica carinata HOM05D007502 ORTHO05D010230 1.1e-56 224.6 170 77.1
BcaB02g09908 Brassica carinata HOM05D007502 ORTHO05D011692 9.1e-51 204.9 137 82.5
AL8G43640 Arabidopsis lyrata HOM05D007502 ORTHO05D011692 1.2e-47 194.5 138 79.7
AT5G65925 Arabidopsis thaliana HOM05D007502 ORTHO05D011692 1.6e-47 194.1 144 74.3
Thhalv10005632m.g Eutrema salsugineum HOM05D007502 ORTHO05D011692 2.3e-46 190.3 135 78.5
A02p44110 Brassica napus HOM05D007502 ORTHO05D011692 6.7e-46 188.7 136 77.9
BolC2t12501H Brassica oleracea HOM05D007502 ORTHO05D011692 6.7e-46 188.7 136 77.9
BraA02t09334Z Brassica rapa HOM05D007502 ORTHO05D011692 6.7e-46 188.7 136 77.9
Sp2g29000 Schrenkiella parvula HOM05D007502 ORTHO05D011692 1.2e-45 188.0 133 81.2
C02p64370 Brassica napus HOM05D007502 ORTHO05D011692 1.5e-45 187.6 134 77.6
CARHR279950 Cardamine hirsuta HOM05D007502 ORTHO05D010230 2.0e-45 187.2 162 71.6
Thhalv10005075m.g Eutrema salsugineum HOM05D007502 ORTHO05D010230 6.3e-44 182.2 149 72.5
Carub.0008s2682 Capsella rubella HOM05D007502 ORTHO05D011692 8.3e-44 181.8 136 74.3
Carub.0008s2683 Capsella rubella HOM05D007502 ORTHO05D010230 1.8e-43 180.6 195 61.0
AT5G67640 Arabidopsis thaliana HOM05D007502 ORTHO05D010230 4.5e-42 176.0 194 61.3
CARHR279940 Cardamine hirsuta HOM05D007502 ORTHO05D011692 1.5e-40 171.0 149 66.4
BcaC03g18361 Brassica carinata HOM05D007502 ORTHO05D011692 8.3e-36 155.2 112 76.8
AL8G43660 Arabidopsis lyrata HOM05D007502 ORTHO05D010230 2.1e-31 140.6 154 60.4
Thhalv10011022m.g Eutrema salsugineum HOM05D007502 ORTHO05D011692 2.7e-26 123.6 136 58.1
A01p24440 Brassica napus HOM05D007502 ORTHO05D011692 3.9e-25 119.8 133 54.1
BraA01t02357Z Brassica rapa HOM05D007502 ORTHO05D011692 6.6e-25 119.0 133 54.1
AT3G49820 Arabidopsis thaliana HOM05D007502 ORTHO05D011692 8.6e-25 118.6 168 50.6
BcaC09g49977 Brassica carinata HOM05D007502 ORTHO05D011692 5.6e-24 115.9 135 54.1
C01p30460 Brassica napus HOM05D007502 ORTHO05D011692 5.6e-24 115.9 135 54.1
BolC1t02989H Brassica oleracea HOM05D007502 ORTHO05D011692 5.6e-24 115.9 135 54.1
AL5G29820 Arabidopsis lyrata HOM05D007502 ORTHO05D011692 7.3e-24 115.5 137 53.3
Sp5g12270 Schrenkiella parvula HOM05D007502 ORTHO05D011692 1.4e-22 111.3 135 51.1
BcaC03g15504 Brassica carinata HOM05D007502 ORTHO05D011692 5.2e-22 109.4 77 74.0
Ciclev10027603m.g Citrus clementina HOM05D007502 ORTHO05D010230 2.0e-21 107.5 171 48.5
BcaB05g23165 Brassica carinata HOM05D007502 ORTHO05D011692 5.8e-21 105.9 132 50.8
Aa31LG1G16180 Aethionema arabicum HOM05D007502 ORTHO05D010230 2.2e-20 104.0 155 49.7
Carub.0005s1617 Capsella rubella HOM05D007502 ORTHO05D011692 1.1e-19 101.7 137 54.7
CARHR158890 Cardamine hirsuta HOM05D007502 ORTHO05D011692 2.0e-18 97.4 138 48.6
Prupe.6G218900 Prunus persica HOM05D007502 ORTHO05D010230 6.2e-15 85.9 168 42.3
Cpa.g.c26343.2 Carica papaya HOM05D007502 ORTHO05D010230 2.3e-14 84.0 169 45.0
RcHm_v2.0_Chr2g0108411 Rosa chinensis HOM05D007502 ORTHO05D010230 3.1e-14 83.6 157 42.7
MD15G1299000 Malus domestica HOM05D007502 ORTHO05D010230 1.5e-13 81.3 168 42.3
PGSC0003DMG401021412 Solanum tuberosum HOM05D007502 ORTHO05D010230 2.2e-12 77.4 152 46.1
Thecc.01G074400 Theobroma cacao HOM05D007502 ORTHO05D010230 2.9e-12 77.0 185 36.8
Potri.007G006000 Populus trichocarpa HOM05D007502 ORTHO05D010230 4.9e-12 76.3 177 39.5
Gorai.007G225000 Gossypium raimondii HOM05D007502 ORTHO05D010230 1.1e-11 75.1 174 40.2
Gohir.D11G209800 Gossypium hirsutum HOM05D007502 ORTHO05D010230 1.9e-11 74.3 170 40.0
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 2.4e-11 73.9 333 29.1
CiPaw.01G003100 Carya illinoinensis HOM05D007502 ORTHO05D010230 5.4e-11 72.8 167 36.5
Lalb_Chr05g0213781 Lupinus albus HOM05D007502 ORTHO05D010230 5.4e-11 72.8 171 37.4
COL.COLO4_11595 Corchorus olitorius HOM05D007502 ORTHO05D010230 7.0e-11 72.4 176 39.2
QL06p039372 Quercus lobata HOM05D007502 ORTHO05D010230 9.2e-11 72.0 159 39.6
CANSAT01G3167 Cannabis sativa HOM05D007502 ORTHO05D010230 2.1e-10 70.9 164 39.0
CSS0024819 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 2.7e-10 70.5 170 39.4
Eucgr.I00691 Eucalyptus grandis HOM05D007502 ORTHO05D010230 3.5e-10 70.1 184 37.5
Glyma.11G046600 Glycine max HOM05D007502 ORTHO05D010230 7.8e-10 68.9 164 37.8
Solyc02g092200.3 Solanum lycopersicum HOM05D007502 ORTHO05D010230 1.0e-09 68.6 164 41.5
DCAR_025816 Daucus carota HOM05D007502 ORTHO05D010230 1.7e-09 67.8 170 37.6
Duzib187G0517 Durio zibethinus HOM05D007502 ORTHO05D010230 1.7e-09 67.8 190 36.8
Sopen02g036770 Solanum pennellii HOM05D007502 ORTHO05D010230 3.9e-09 66.6 170 40.6
Cfa004764 Carpinus fangiana HOM05D007502 ORTHO05D010230 5.1e-09 66.2 176 33.5
TAR628G1349 Trochodendron aralioides HOM05D007502 ORTHO05D010230 1.9e-08 64.3 166 36.7
Cc07_g07260 Coffea canephora HOM05D007502 ORTHO05D010230 2.5e-08 63.9 170 37.1
Sabra07G0004300 Salix brachista HOM05D007502 ORTHO05D010230 2.5e-08 63.9 177 36.2
Medtr5g015230 Medicago truncatula HOM05D007502 ORTHO05D010230 3.3e-08 63.5 156 38.5
Lj2g0008607 Lotus japonicus HOM05D007502 ORTHO05D010230 5.6e-08 62.8 185 36.8
Glyma.05G107000 Glycine max HOM05D001896 ORTHO05D001862 7.3e-08 62.4 150 34.7
CAN.G1075.51 Capsicum annuum HOM05D001896 ORTHO05D001862 9.5e-08 62.0 133 37.6
Gohir.A11G213400 Gossypium hirsutum HOM05D007502 ORTHO05D010230 9.5e-08 62.0 170 37.6
CDE06G1988 Ceratophyllum demersum HOM05D007502 ORTHO05D010230 1.2e-07 61.6 99 43.4
ECA238G4396 Erigeron canadensis HOM05D007502 ORTHO05D010230 1.2e-07 61.6 180 35.6
Psat2g171920 Pisum sativum HOM05D007502 ORTHO05D010230 1.2e-07 61.6 133 38.3
vmacro05426 Vaccinium macrocarpon HOM05D007502 ORTHO05D010230 1.6e-07 61.2 175 38.3
Phvul.002G009800 Phaseolus vulgaris HOM05D007502 ORTHO05D010230 3.6e-07 60.1 172 34.9
Haze_10361 Corylus avellana HOM05D007502 ORTHO05D010230 1.1e-06 58.5 181 35.4
Glyma.01G195100 Glycine max HOM05D007502 ORTHO05D010230 1.4e-06 58.2 111 37.8
Lsat_1_v5_gn_2_82580 Lactuca sativa HOM05D007502 ORTHO05D010230 1.8e-06 57.8 185 35.7
arahy.Tifrunner.gnm1.ann1.69I0H7 Arachis hypogaea HOM05D007502 ORTHO05D010230 2.3e-06 57.4 164 36.0
Gohir.D05G214500 Gossypium hirsutum HOM05D001896 ORTHO05D001862 2.3e-06 57.4 129 38.0
CSS0004026 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 4.0e-06 56.6 152 38.2
Actinidia11971 Actinidia chinensis HOM05D007502 ORTHO05D010230 5.2e-06 56.2 172 34.9
Gorai.009G221200 Gossypium raimondii HOM05D001896 ORTHO05D001862 5.2e-06 56.2 129 36.4
Gohir.A05G211200 Gossypium hirsutum HOM05D001896 ORTHO05D001862 6.8e-06 55.8 129 35.7
VMungo1215G1334 Vigna mungo HOM05D007502 ORTHO05D010230 8.9e-06 55.5 201 32.3


User provided reference genes

Program Settings