Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p58560 Brassica napus HOM05D003687 ORTHO05D102959 1.6e-41 172.2 78 100.0
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 5.2e-08 60.8 72 45.8
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 2.6e-07 58.5 89 42.7
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 4.4e-07 57.8 29 82.8
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 9.8e-07 56.6 29 79.3
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 9.8e-07 56.6 29 82.8
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 2.2e-06 55.5 29 75.9
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 2.2e-06 55.5 29 75.9
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 2.2e-06 55.5 24 91.7
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 2.2e-06 55.5 29 75.9
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 2.2e-06 55.5 29 75.9
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 2.2e-06 55.5 29 75.9
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.2e-06 55.5 29 75.9
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 2.2e-06 55.5 29 75.9
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 2.2e-06 55.5 29 75.9
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 2.2e-06 55.5 29 75.9
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 2.9e-06 55.1 29 75.9
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 2.9e-06 55.1 29 75.9
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 2.9e-06 55.1 29 75.9
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 2.9e-06 55.1 29 75.9
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 2.9e-06 55.1 29 75.9
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 2.9e-06 55.1 63 41.3
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 3.7e-06 54.7 46 52.2
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 4.9e-06 54.3 29 72.4
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.9e-06 54.3 29 72.4
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.9e-06 54.3 29 72.4
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.9e-06 54.3 29 72.4
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 4.9e-06 54.3 29 72.4
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 6.4e-06 53.9 46 52.2
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 6.4e-06 53.9 29 72.4
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 8.3e-06 53.5 63 42.9
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 8.3e-06 53.5 51 52.9
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 8.3e-06 53.5 29 75.9
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 8.3e-06 53.5 29 75.9
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 8.3e-06 53.5 29 75.9
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 8.3e-06 53.5 29 75.9
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 8.3e-06 53.5 29 75.9
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 8.3e-06 53.5 29 75.9
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 8.3e-06 53.5 29 75.9


User provided reference genes

Program Settings