Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-116 422.9 256 100.0
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-116 422.9 256 100.0
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 9.7e-112 407.1 268 94.0
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.7e-95 352.1 260 85.4
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 5.4e-94 348.2 260 84.2
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.3e-92 343.6 273 82.8
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 2.9e-79 299.3 305 70.5
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 6.4e-71 271.6 299 64.5
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 2.4e-70 269.6 279 71.3
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 3.5e-69 265.8 285 66.3
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 7.8e-69 264.6 285 66.0
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.0e-68 262.7 293 71.3
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 1.5e-64 250.4 299 59.9
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 5.8e-56 221.9 279 59.9
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 6.4e-55 218.4 279 59.5
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.1e-50 203.4 322 49.7
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 4.4e-48 195.7 209 67.0
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.2e-45 187.6 294 53.7
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.7e-45 186.4 325 50.5
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.3e-44 184.1 286 53.5
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.1e-41 174.5 288 55.6
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.8e-41 173.7 285 56.1
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.4e-41 173.3 279 55.9
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.2e-40 171.0 299 50.5
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.0e-40 170.2 284 47.9
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 4.9e-39 165.6 307 51.1
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.9e-38 163.7 288 54.2
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.9e-35 153.7 256 51.6
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.5e-32 144.1 259 52.5
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 2.6e-32 143.3 258 53.5
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 2.9e-31 139.8 332 44.0
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.1e-29 133.7 267 52.8
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 3.5e-29 132.9 267 52.4
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 7.9e-29 131.7 332 37.7
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 7.9e-29 131.7 320 42.5
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.5e-27 127.5 324 36.1
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 2.5e-27 126.7 290 38.3
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 5.6e-27 125.6 265 51.7
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 9.6e-27 124.8 306 38.2
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.6e-26 124.0 323 39.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 2.8e-26 123.2 253 51.0
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 4.8e-26 122.5 348 39.9
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 4.8e-26 122.5 307 35.5
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.1e-25 121.3 312 36.9
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.8e-25 120.6 313 41.9
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 3.1e-25 119.8 248 49.6
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 3.1e-25 119.8 248 49.6
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 9.0e-25 118.2 311 40.2
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.5e-24 117.5 319 38.9
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.6e-24 116.7 324 35.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 3.4e-24 116.3 304 43.1
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 7.6e-24 115.2 265 49.8
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 7.6e-24 115.2 331 35.3
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.3e-23 114.4 286 36.7
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.7e-23 114.0 309 35.9
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 6.5e-23 112.1 272 36.0
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 8.4e-23 111.7 307 34.9
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.1e-22 111.3 299 35.8
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.4e-22 110.9 309 35.3
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.4e-22 110.9 309 35.3
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.9e-22 110.5 328 35.1
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.5e-22 110.2 349 39.8
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 3.2e-22 109.8 312 37.8
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 4.2e-22 109.4 304 36.8
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 4.2e-22 109.4 304 36.8
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 5.5e-22 109.0 141 71.6
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 7.1e-22 108.6 297 36.0
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 7.1e-22 108.6 297 36.0
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 9.3e-22 108.2 304 32.9
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.2e-21 107.8 312 37.5
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.2e-21 107.8 313 35.1
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.5e-21 106.3 307 33.2
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.5e-21 106.3 312 37.2
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 3.5e-21 106.3 313 33.9
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 4.6e-21 105.9 317 39.4
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 7.9e-21 105.1 325 36.6
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 7.9e-21 105.1 307 34.2
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 1.0e-20 104.8 307 34.2
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.3e-20 104.4 305 34.4
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 2.3e-20 103.6 311 36.7
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.3e-20 103.6 311 36.7
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 3.0e-20 103.2 324 33.3
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.9e-20 102.8 311 38.9
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 5.1e-20 102.4 311 36.0
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.1e-19 101.3 307 33.6
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.1e-19 101.3 296 35.1
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 3.3e-19 99.8 308 33.1
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 4.3e-19 99.4 303 34.0
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 4.3e-19 99.4 313 34.2
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 5.7e-19 99.0 328 32.6
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 5.7e-19 99.0 299 33.4
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 7.4e-19 98.6 325 33.5
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.3e-18 97.8 313 34.2
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.3e-18 97.8 307 33.6
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.2e-18 97.1 188 40.4
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.2e-18 97.1 290 34.1
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 6.3e-18 95.5 327 32.1
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 6.3e-18 95.5 304 38.5
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 2.4e-17 93.6 295 32.9
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 2.4e-17 93.6 293 33.4
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 3.1e-17 93.2 286 31.1
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 3.1e-17 93.2 316 35.8
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.1e-17 93.2 296 32.4
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 4.1e-17 92.8 281 37.0
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.3e-17 92.4 307 32.2
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.3e-17 92.4 305 32.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.0e-16 90.5 311 34.1
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 2.6e-16 90.1 294 37.8
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.6e-16 90.1 327 37.3
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.5e-16 89.4 321 36.8
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 5.9e-16 89.0 323 36.5
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 5.9e-16 89.0 311 31.2
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 7.7e-16 88.6 277 32.5
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 7.7e-16 88.6 310 30.3
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.0e-15 88.2 248 36.7
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 1.0e-15 88.2 293 33.8
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.3e-15 87.8 273 34.4
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.7e-15 87.4 309 31.4
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 2.2e-15 87.0 299 33.1
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 3.8e-15 86.3 273 33.3
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 3.8e-15 86.3 311 30.2
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 5.0e-15 85.9 321 31.2
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.5e-15 85.5 300 31.7
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 6.5e-15 85.5 312 29.5
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 8.5e-15 85.1 317 34.1
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.4e-14 84.3 308 31.2
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.9e-14 84.0 325 37.2
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.5e-14 83.6 321 29.6
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 4.2e-14 82.8 222 37.4
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 4.2e-14 82.8 305 30.8
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 5.5e-14 82.4 334 30.8
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 7.2e-14 82.0 320 30.0
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 7.2e-14 82.0 263 33.1
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 7.2e-14 82.0 263 33.1
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.2e-13 81.3 297 32.0
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.1e-13 80.5 327 31.5
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.0e-12 78.2 324 32.4
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 3.9e-12 76.3 312 30.1
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 8.8e-12 75.1 318 28.9
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.5e-11 74.3 318 28.9
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.0e-11 73.9 309 30.4
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 5.7e-11 72.4 277 30.3
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.3e-10 71.2 292 29.1
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 3.7e-10 69.7 262 31.7
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 6.3e-10 68.9 233 31.8
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 6.3e-10 68.9 301 29.2
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.4e-09 67.8 300 29.3
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 1.8e-09 67.4 189 33.9
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.1e-09 66.2 307 27.7
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.9e-09 65.5 303 29.0
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 3.4e-08 63.2 303 29.4
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 4.5e-08 62.8 318 24.8
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 4.5e-08 62.8 61 60.7
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 3.8e-07 59.7 293 28.0
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 3.8e-07 59.7 293 28.0
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 8.5e-07 58.5 291 28.9
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.1e-06 58.2 229 30.6
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.2e-06 56.6 174 35.1


User provided reference genes

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