Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p58210 Brassica napus HOM05D001098 ORTHO05D012826 1.3e-68 263.1 142 100.0
C03p62850 Brassica napus HOM05D001098 ORTHO05D012826 3.6e-39 165.2 91 98.9
C07p57770 Brassica napus HOM05D001098 ORTHO05D012826 1.0e-33 147.1 142 65.5
BraA10t45200Z Brassica rapa HOM05D001098 ORTHO05D012826 1.2e-31 140.2 114 74.6
C09p31930 Brassica napus HOM05D001098 ORTHO05D012826 3.0e-30 135.6 142 61.3
C03p20580 Brassica napus HOM05D001098 ORTHO05D012826 8.8e-30 134.0 152 60.5
BolC3t14466H Brassica oleracea HOM05D001098 ORTHO05D012826 8.8e-30 134.0 152 60.5
A09p10750 Brassica napus HOM05D001098 ORTHO05D012826 3.3e-29 132.1 136 62.5
C03p64650 Brassica napus HOM05D001098 ORTHO05D012826 5.7e-29 131.3 153 58.8
BolC3t18723H Brassica oleracea HOM05D001098 ORTHO05D012826 5.7e-29 131.3 153 58.8
BcaC01g00493 Brassica carinata HOM05D001098 ORTHO05D002527 2.5e-16 89.4 109 55.0
BolC3t20307H Brassica oleracea HOM05D001098 ORTHO05D002527 3.3e-16 89.0 110 54.5
C03p80640 Brassica napus HOM05D001098 ORTHO05D002527 4.2e-16 88.6 110 54.5
BcaB03g12410 Brassica carinata HOM05D001098 ORTHO05D002527 1.2e-15 87.0 109 54.1
BcaNung02390 Brassica carinata HOM05D001098 ORTHO05D002527 1.2e-15 87.0 109 54.1
BcaNung06457 Brassica carinata HOM05D001098 ORTHO05D002527 1.2e-15 87.0 109 54.1
A03p63540 Brassica napus HOM05D001098 ORTHO05D002527 1.2e-15 87.0 109 54.1
C07p61120 Brassica napus HOM05D001098 ORTHO05D002527 1.2e-15 87.0 109 54.1
BolC7t46536H Brassica oleracea HOM05D001098 ORTHO05D002527 1.2e-15 87.0 109 54.1
BraA03t15424Z Brassica rapa HOM05D001098 ORTHO05D002527 1.2e-15 87.0 109 54.1
Sp7g33130 Schrenkiella parvula HOM05D001098 ORTHO05D002527 1.2e-15 87.0 109 53.2
A01p03220 Brassica napus HOM05D001098 ORTHO05D002527 1.6e-15 86.7 110 53.6
BraA01t00307Z Brassica rapa HOM05D001098 ORTHO05D002527 1.6e-15 86.7 110 53.6
BraA08t34142Z Brassica rapa HOM05D001098 ORTHO05D002527 1.6e-15 86.7 110 53.6
Carub.0007s0496 Capsella rubella HOM05D001098 ORTHO05D002527 1.6e-15 86.7 109 53.2
Thhalv10025582m.g Eutrema salsugineum HOM05D001098 ORTHO05D002527 1.6e-15 86.7 109 53.2
C01p03570 Brassica napus HOM05D001098 ORTHO05D002527 2.1e-15 86.3 110 52.7
AL7G15820 Arabidopsis lyrata HOM05D001098 ORTHO05D002527 2.8e-15 85.9 109 53.2
Lsat_1_v5_gn_8_120701 Lactuca sativa HOM05D001098 ORTHO05D002527 4.7e-15 85.1 120 48.3
Prupe.8G181000 Prunus persica HOM05D001098 ORTHO05D002527 4.7e-15 85.1 120 49.2
Atru.chr5.3569 Acer truncatum HOM05D001098 ORTHO05D002527 8.0e-15 84.3 109 53.2
A08p21890 Brassica napus HOM05D001098 ORTHO05D002527 8.0e-15 84.3 110 52.7
CARHR243660 Cardamine hirsuta HOM05D001098 ORTHO05D002527 8.0e-15 84.3 109 51.4
Ciclev10028748m.g Citrus clementina HOM05D001098 ORTHO05D002527 1.0e-14 84.0 108 53.7
MD05G1141000 Malus domestica HOM05D001098 ORTHO05D002527 1.4e-14 83.6 120 47.5
Sed0023927 Sechium edule HOM05D001098 ORTHO05D002527 1.4e-14 83.6 120 45.8
Dinv41864 Davidia involucrata HOM05D001098 ORTHO05D002527 1.8e-14 83.2 120 48.3
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 2.3e-14 82.8 120 46.7
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 2.3e-14 82.8 120 46.7
Aa31sc18G70 Aethionema arabicum HOM05D001098 ORTHO05D002527 4.0e-14 82.0 109 51.4
FvH4_2g16930 Fragaria vesca HOM05D001098 ORTHO05D002527 4.0e-14 82.0 120 47.5
FAN24G1038 Fragaria x ananassa HOM05D001098 ORTHO05D002527 4.0e-14 82.0 120 47.5
FAN27G2361 Fragaria x ananassa HOM05D001098 ORTHO05D002527 4.0e-14 82.0 120 47.5
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 4.0e-14 82.0 120 46.7
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 4.0e-14 82.0 120 46.7
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 5.2e-14 81.6 120 45.8
ECA233G3688 Erigeron canadensis HOM05D001098 ORTHO05D002527 5.2e-14 81.6 120 46.7
Hma1.2p1_0032F.1_g018710 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 5.2e-14 81.6 120 47.5
MD11G1242300 Malus domestica HOM05D001098 ORTHO05D002527 5.2e-14 81.6 120 45.8
SalBow1G7648 Salvia bowleyana HOM05D001098 ORTHO05D002527 5.2e-14 81.6 109 50.5
SalBow7G2674 Salvia bowleyana HOM05D001098 ORTHO05D002527 5.2e-14 81.6 109 50.5
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 5.2e-14 81.6 120 45.8
Zm00001eb412040 Zea mays HOM05D001098 ORTHO05D002527 5.2e-14 81.6 120 45.8
MELO3C013485.2 Cucumis melo HOM05D001098 ORTHO05D002527 6.8e-14 81.3 120 45.0
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 6.8e-14 81.3 121 47.1
RcHm_v2.0_Chr6g0281071 Rosa chinensis HOM05D001098 ORTHO05D002527 6.8e-14 81.3 120 47.5
EL10Ac9g21546 Beta vulgaris HOM05D001098 ORTHO05D002527 8.9e-14 80.9 120 45.0
TAR628G0214 Trochodendron aralioides HOM05D000069 ORTHO05D000060 8.9e-14 80.9 111 48.6
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 1.2e-13 80.5 120 45.8
Os07g0573700 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D002527 1.2e-13 80.5 120 45.0
Aqoxy3G04159 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 1.5e-13 80.1 124 43.5
Eucgr.I01538 Eucalyptus grandis HOM05D001098 ORTHO05D002527 2.0e-13 79.7 120 45.8
MBI01_g17242_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 2.0e-13 79.7 120 46.7
MBI01_g32424_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 2.0e-13 79.7 120 46.7
Rhsim05G0044700 Rhododendron simsii HOM05D001098 ORTHO05D002527 2.6e-13 79.3 120 45.0
TPR.G18630 Trifolium pratense HOM05D001098 ORTHO05D002527 2.6e-13 79.3 108 48.1
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 2.6e-13 79.3 120 46.7
arahy.Tifrunner.gnm1.ann1.1X8DY6 Arachis hypogaea HOM05D001098 ORTHO05D002527 3.4e-13 79.0 109 48.6
CANSAT25G0204 Cannabis sativa HOM05D001098 ORTHO05D002527 3.4e-13 79.0 120 44.2
AUR62013184 Chenopodium quinoa HOM05D001098 ORTHO05D002527 3.4e-13 79.0 109 48.6
Cc09_g10880 Coffea canephora HOM05D001098 ORTHO05D002527 3.4e-13 79.0 108 49.1
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 4.4e-13 78.6 120 45.0
Migut.B00005 Erythranthe guttata HOM05D001098 ORTHO05D002527 4.4e-13 78.6 120 45.8
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 5.7e-13 78.2 108 49.1
LjContig00081g0022408 Lotus japonicus HOM05D001098 ORTHO05D002527 5.7e-13 78.2 108 49.1
Manes.02G204100 Manihot esculenta HOM05D001098 ORTHO05D002527 5.7e-13 78.2 120 46.7
Sc08g0002100 Simmondsia chinensis HOM05D001098 ORTHO05D002527 5.7e-13 78.2 108 48.1
Actinidia17990 Actinidia chinensis HOM05D001098 ORTHO05D002527 7.5e-13 77.8 120 45.8
Lj9A408T81 Lonicera japonica HOM05D001098 ORTHO05D002527 7.5e-13 77.8 120 46.7
Duzib132G1111 Durio zibethinus HOM05D001098 ORTHO05D002527 9.8e-13 77.4 109 48.6
Actinidia20579 Actinidia chinensis HOM05D001098 ORTHO05D002527 1.3e-12 77.0 120 45.8
Ca_06505_v3 Cicer arietinum L. HOM05D001098 ORTHO05D002527 1.3e-12 77.0 108 48.1
Duzib248G0955 Durio zibethinus HOM05D001098 ORTHO05D002527 1.3e-12 77.0 108 49.1
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 1.3e-12 77.0 108 48.1
Medtr5g099280 Medicago truncatula HOM05D001098 ORTHO05D002527 1.3e-12 77.0 108 48.1
Oeu050440.1 Olea europaea HOM05D001098 ORTHO05D002527 1.3e-12 77.0 120 45.0
VMungo0647G1862 Vigna mungo HOM05D001098 ORTHO05D002527 1.3e-12 77.0 108 47.2
Ah.01g017660 Amaranthus hybridus HOM05D001098 ORTHO05D002527 1.7e-12 76.6 120 44.2
FAN15G1608 Fragaria x ananassa HOM05D001098 ORTHO05D002527 1.7e-12 76.6 139 43.9
Psat2g000520 Pisum sativum HOM05D001098 ORTHO05D002527 1.7e-12 76.6 108 46.3
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.7e-12 76.6 109 48.6
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 2.2e-12 76.3 109 47.7
CiPaw.06G114700 Carya illinoinensis HOM05D001098 ORTHO05D002527 2.2e-12 76.3 108 49.1
Peaxi162Scf00296g01213 Petunia axillaris HOM05D001098 ORTHO05D002527 2.2e-12 76.3 120 45.8
PGR142G3259 Punica granatum HOM05D001098 ORTHO05D002527 2.2e-12 76.3 108 49.1
arahy.Tifrunner.gnm1.ann1.5U49GI Arachis hypogaea HOM05D001098 ORTHO05D002527 2.8e-12 75.9 111 48.6
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 2.8e-12 75.9 111 48.6
CiPaw.05G093900 Carya illinoinensis HOM05D001098 ORTHO05D002527 2.8e-12 75.9 109 48.6
Solyc11g008590.2 Solanum lycopersicum HOM05D001098 ORTHO05D002527 2.8e-12 75.9 109 49.5
Sopen11g004380 Solanum pennellii HOM05D001098 ORTHO05D002527 2.8e-12 75.9 109 49.5
PGSC0003DMG400016250 Solanum tuberosum HOM05D001098 ORTHO05D002527 2.8e-12 75.9 109 49.5
HPP92_015755 Vanilla planifolia HOM05D001098 ORTHO05D002527 2.8e-12 75.9 120 42.5
Zm00001eb325140 Zea mays HOM05D001098 ORTHO05D002527 2.8e-12 75.9 120 42.5
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 3.7e-12 75.5 124 41.9
CAN.G321.15 Capsicum annuum HOM05D001098 ORTHO05D002527 3.7e-12 75.5 121 45.5
Nitab4.5_0001003g0090 Nicotiana tabacum HOM05D001098 ORTHO05D002527 3.7e-12 75.5 109 49.5
TAR381G1518 Trochodendron aralioides HOM05D001098 ORTHO05D002527 3.7e-12 75.5 118 44.1
Nitab4.5_0009631g0030 Nicotiana tabacum HOM05D001098 ORTHO05D002527 4.9e-12 75.1 108 50.0
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 4.9e-12 75.1 123 42.3
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 6.3e-12 74.7 109 46.8
Lalb_Chr10g0107701 Lupinus albus HOM05D001098 ORTHO05D002527 6.3e-12 74.7 108 45.4
PSO541G0403 Papaver somniferum HOM05D001098 ORTHO05D002527 6.3e-12 74.7 121 43.0
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 8.3e-12 74.3 109 47.7
PSO675G9097 Papaver somniferum HOM05D001098 ORTHO05D002527 8.3e-12 74.3 121 42.1
Potri.016G113200 Populus trichocarpa HOM05D001098 ORTHO05D002527 1.4e-11 73.6 120 43.3
Thecc.02G147100 Theobroma cacao HOM05D001098 ORTHO05D002527 2.4e-11 72.8 109 46.8
Gohir.A13G064400 Gossypium hirsutum HOM05D001098 ORTHO05D002527 3.1e-11 72.4 108 46.3
Gohir.D04G152000 Gossypium hirsutum HOM05D001098 ORTHO05D002527 3.1e-11 72.4 109 46.8
Rhsim11G0198300 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.1e-11 72.4 112 45.5
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 4.1e-11 72.0 120 42.5
QL06p014336 Quercus lobata HOM05D001098 ORTHO05D002527 5.4e-11 71.6 108 47.2
Gohir.A04G111700 Gossypium hirsutum HOM05D001098 ORTHO05D002527 7.0e-11 71.2 109 45.9
Gorai.012G138800 Gossypium raimondii HOM05D001098 ORTHO05D002527 7.0e-11 71.2 109 45.9
unitig_90.g27539 Utricularia gibba HOM05D001098 ORTHO05D002527 9.2e-11 70.9 120 40.0
AUR62010182 Chenopodium quinoa HOM05D001098 ORTHO05D002527 1.2e-10 70.5 143 40.6
Aqoxy2G01309 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 1.6e-10 70.1 121 43.0
Aqoxy6G01547 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 1.6e-10 70.1 121 43.0
Nn6g31647 Nelumbo nucifera HOM05D001098 ORTHO05D002527 1.6e-10 70.1 120 40.0
QL05p062370 Quercus lobata HOM05D001098 ORTHO05D002527 2.7e-10 69.3 128 39.8
SEGI_11233 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 2.3e-09 66.2 108 43.5
SEGI_32505 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 2.3e-09 66.2 112 41.1
AagrBONN_evm.TU.Sc2ySwM_368.1241 Anthoceros agrestis HOM05D001098 ORTHO05D002527 5.6e-08 61.6 109 43.1
C07p61130 Brassica napus HOM05D001098 ORTHO05D012826 2.3e-06 56.2 50 68.0
BolC7t46537H Brassica oleracea HOM05D001098 ORTHO05D012826 2.3e-06 56.2 50 68.0
BolC1t00346H Brassica oleracea HOM05D001098 ORTHO05D012826 4.0e-06 55.5 53 62.3
CBR_g38158 Chara braunii HOM05D001098 ORTHO05D000301 5.2e-06 55.1 108 39.8


User provided reference genes

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