Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p57420 Brassica napus HOM05D000452 ORTHO05D041690 3.0e-26 120.9 56 100.0
BolC3t18017H Brassica oleracea HOM05D000452 ORTHO05D041690 4.0e-26 120.6 55 100.0
CARHR121250 Cardamine hirsuta HOM05D000452 ORTHO05D002419 6.8e-10 66.6 51 56.9
AL4G21760 Arabidopsis lyrata HOM05D000452 ORTHO05D002419 9.8e-09 62.8 50 54.0
AT2G28320 Arabidopsis thaliana HOM05D000452 ORTHO05D002419 9.8e-09 62.8 50 54.0
A07p18860 Brassica napus HOM05D000452 ORTHO05D002419 9.8e-09 62.8 50 54.0
C04p23200 Brassica napus HOM05D000452 ORTHO05D002419 9.8e-09 62.8 50 54.0
BraA07t29593Z Brassica rapa HOM05D000452 ORTHO05D002419 9.8e-09 62.8 50 54.0
Carub.0004s0922 Capsella rubella HOM05D000452 ORTHO05D002419 9.8e-09 62.8 50 54.0
Sp4g11110 Schrenkiella parvula HOM05D000452 ORTHO05D002419 9.8e-09 62.8 50 54.0
PGR102G3153 Punica granatum HOM05D000452 ORTHO05D002419 1.7e-08 62.0 50 54.0
BolC4t23816H Brassica oleracea HOM05D000452 ORTHO05D002419 2.2e-08 61.6 50 52.0
Thhalv10016308m.g Eutrema salsugineum HOM05D000452 ORTHO05D002419 2.2e-08 61.6 50 52.0
Manes.11G146900 Manihot esculenta HOM05D000452 ORTHO05D002419 2.2e-08 61.6 50 54.0
Potri.009G011200 Populus trichocarpa HOM05D000452 ORTHO05D002419 2.2e-08 61.6 50 52.0
Manes.10G046900 Manihot esculenta HOM05D000452 ORTHO05D002419 4.9e-08 60.5 50 52.0
Dinv31315 Davidia involucrata HOM05D000452 ORTHO05D002419 6.4e-08 60.1 48 54.2
Glyma.13G325000 Glycine max HOM05D000452 ORTHO05D002419 6.4e-08 60.1 50 52.0
Gohir.D05G103800 Gossypium hirsutum HOM05D000452 ORTHO05D002419 6.4e-08 60.1 50 52.0
Gorai.009G108000 Gossypium raimondii HOM05D000452 ORTHO05D002419 6.4e-08 60.1 50 52.0
Lj3g0020118 Lotus japonicus HOM05D000452 ORTHO05D002419 6.4e-08 60.1 50 52.0
Phvul.005G134300 Phaseolus vulgaris HOM05D000452 ORTHO05D002419 6.4e-08 60.1 50 52.0
VMungo1080G1144 Vigna mungo HOM05D000452 ORTHO05D002419 6.4e-08 60.1 50 52.0
arahy.Tifrunner.gnm1.ann1.P7YJ1Q Arachis hypogaea HOM05D000452 ORTHO05D002419 8.3e-08 59.7 48 54.2
arahy.Tifrunner.gnm1.ann1.W5QVW0 Arachis hypogaea HOM05D000452 ORTHO05D002419 8.3e-08 59.7 48 54.2
Cfa011304 Carpinus fangiana HOM05D000452 ORTHO05D002419 8.3e-08 59.7 50 52.0
CiPaw.13G115300 Carya illinoinensis HOM05D000452 ORTHO05D002419 8.3e-08 59.7 50 52.0
Glyma.12G174400 Glycine max HOM05D000452 ORTHO05D002419 8.3e-08 59.7 50 52.0
Prupe.6G103400 Prunus persica HOM05D000452 ORTHO05D002419 8.3e-08 59.7 50 52.0
THA.LOC104826373 Tarenaya hassleriana HOM05D000452 ORTHO05D002419 8.3e-08 59.7 50 52.0
CANSAT54G2974 Cannabis sativa HOM05D000452 ORTHO05D002419 1.1e-07 59.3 50 50.0
Duzib168G2410 Durio zibethinus HOM05D000452 ORTHO05D002419 1.1e-07 59.3 50 52.0
Lalb_Chr24g0394681 Lupinus albus HOM05D000452 ORTHO05D002419 1.1e-07 59.3 48 54.2
Sc20g0001800 Simmondsia chinensis HOM05D000452 ORTHO05D002419 1.1e-07 59.3 50 52.0
Actinidia22449 Actinidia chinensis HOM05D000452 ORTHO05D002419 1.4e-07 58.9 48 52.1
Thecc.09G342500 Theobroma cacao HOM05D000452 ORTHO05D002419 1.4e-07 58.9 50 52.0
FAN11G0651 Fragaria x ananassa HOM05D000452 ORTHO05D002419 1.9e-07 58.5 41 58.5
Gohir.A05G104000 Gossypium hirsutum HOM05D000452 ORTHO05D002419 1.9e-07 58.5 50 50.0
Lj2A1024T74 Lonicera japonica HOM05D000452 ORTHO05D002419 1.9e-07 58.5 44 54.5
MD11G1137600 Malus domestica HOM05D000452 ORTHO05D002419 1.9e-07 58.5 50 50.0
Sc06g0010330 Simmondsia chinensis HOM05D000452 ORTHO05D002419 1.9e-07 58.5 50 50.0
Atru.chr12.788 Acer truncatum HOM05D000452 ORTHO05D002419 2.4e-07 58.2 48 52.1
MSTRG.27473 Avicennia marina HOM05D000452 ORTHO05D002419 2.4e-07 58.2 50 50.0
CDE07G1828 Ceratophyllum demersum HOM05D000452 ORTHO05D002419 2.4e-07 58.2 50 50.0
DCAR_006432 Daucus carota HOM05D000452 ORTHO05D002419 2.4e-07 58.2 37 59.5
PSO339G6004 Papaver somniferum HOM05D000452 ORTHO05D002419 2.4e-07 58.2 48 54.2
PSO384G1167 Papaver somniferum HOM05D000452 ORTHO05D002419 2.4e-07 58.2 48 54.2
MSTRG.379 Avicennia marina HOM05D000452 ORTHO05D002419 3.2e-07 57.8 48 54.2
Dinv32732 Davidia involucrata HOM05D000452 ORTHO05D002419 3.2e-07 57.8 37 62.2
Psat1g221720 Pisum sativum HOM05D000452 ORTHO05D002419 3.2e-07 57.8 51 52.9
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 4.1e-07 57.4 51 49.0
Hma1.2p1_0058F.1_g032430 Hydrangea macrophylla HOM05D000452 ORTHO05D002419 4.1e-07 57.4 37 59.5
QL01p021876 Quercus lobata HOM05D000452 ORTHO05D002419 4.1e-07 57.4 50 50.0
TPR.G11625 Trifolium pratense HOM05D000452 ORTHO05D002419 4.1e-07 57.4 51 52.9
ATR0048G016 Amborella trichopoda HOM05D000452 ORTHO05D002419 5.4e-07 57.0 51 49.0
Potri.008G038800 Populus trichocarpa HOM05D000452 ORTHO05D002419 5.4e-07 57.0 35 65.7
QL11p052079 Quercus lobata HOM05D000452 ORTHO05D002419 5.4e-07 57.0 50 50.0
Sabra08G0026500 Salix brachista HOM05D000452 ORTHO05D002419 5.4e-07 57.0 35 65.7
TWI79G1205 Tripterygium wilfordii HOM05D000452 ORTHO05D002419 5.4e-07 57.0 50 52.0
Cfa001651 Carpinus fangiana HOM05D000452 ORTHO05D002419 7.0e-07 56.6 50 50.0
Ca_01403_v3 Cicer arietinum L. HOM05D000452 ORTHO05D002419 7.0e-07 56.6 47 53.2
Ciclev10027876m.g Citrus clementina HOM05D000452 ORTHO05D002419 7.0e-07 56.6 47 53.2
Gohir.A03G032700 Gossypium hirsutum HOM05D000452 ORTHO05D002419 7.0e-07 56.6 50 50.0
MBI07_g26022_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D002419 7.0e-07 56.6 48 52.1
Manes.07G099200 Manihot esculenta HOM05D000452 ORTHO05D002419 7.0e-07 56.6 50 50.0
Medtr2g094620 Medicago truncatula HOM05D000452 ORTHO05D002419 7.0e-07 56.6 47 53.2
Psat5g280280 Pisum sativum HOM05D000452 ORTHO05D002419 7.0e-07 56.6 47 53.2
Potri.010G223400 Populus trichocarpa HOM05D000452 ORTHO05D002419 7.0e-07 56.6 50 50.0
RcHm_v2.0_Chr5g0058701 Rosa chinensis HOM05D000452 ORTHO05D002419 7.0e-07 56.6 47 55.3
vmacro07066 Vaccinium macrocarpon HOM05D000452 ORTHO05D002419 7.0e-07 56.6 48 50.0
GSVIVG01025201001 Vitis vinifera HOM05D000452 ORTHO05D002419 7.0e-07 56.6 50 50.0
Atru.chr3.3610 Acer truncatum HOM05D000452 ORTHO05D002419 9.2e-07 56.2 50 50.0
MSTRG.17792 Avicennia marina HOM05D000452 ORTHO05D002419 9.2e-07 56.2 35 62.9
CiPaw.01G272000 Carya illinoinensis HOM05D000452 ORTHO05D002419 9.2e-07 56.2 48 52.1
Duzib114G0095 Durio zibethinus HOM05D000452 ORTHO05D002419 9.2e-07 56.2 35 62.9
Oeu031341.1 Olea europaea HOM05D000452 ORTHO05D002419 9.2e-07 56.2 48 52.1
Migut.F01750 Erythranthe guttata HOM05D000452 ORTHO05D002419 1.2e-06 55.8 48 50.0
Oeu001283.1 Olea europaea HOM05D000452 ORTHO05D002419 1.2e-06 55.8 37 59.5
Hund12059 Selenicereus undatus HOM05D000452 ORTHO05D002419 1.2e-06 55.8 36 58.3
TAR623G0432 Trochodendron aralioides HOM05D000452 ORTHO05D002419 1.2e-06 55.8 50 50.0
Actinidia24108 Actinidia chinensis HOM05D000452 ORTHO05D002419 1.6e-06 55.5 47 51.1
arahy.Tifrunner.gnm1.ann1.6A8G6S Arachis hypogaea HOM05D000452 ORTHO05D002419 1.6e-06 55.5 37 59.5
arahy.Tifrunner.gnm1.ann1.DF6ZAN Arachis hypogaea HOM05D000452 ORTHO05D002419 1.6e-06 55.5 37 59.5
FvH4_3g31950 Fragaria vesca HOM05D000452 ORTHO05D002419 1.6e-06 55.5 47 53.2
FAN10G3087 Fragaria x ananassa HOM05D000452 ORTHO05D002419 1.6e-06 55.5 48 50.0
Gorai.010G205600 Gossypium raimondii HOM05D000452 ORTHO05D002419 1.6e-06 55.5 49 49.0
Rhsim03G0119600 Rhododendron simsii HOM05D000452 ORTHO05D002419 1.6e-06 55.5 48 50.0
THA.LOC104800597 Tarenaya hassleriana HOM05D000452 ORTHO05D002419 1.6e-06 55.5 47 51.1
Dinv36429 Davidia involucrata HOM05D000452 ORTHO05D002419 2.1e-06 55.1 48 50.0
Duzib170G0734 Durio zibethinus HOM05D000452 ORTHO05D002419 2.1e-06 55.1 47 51.1
Migut.F01980 Erythranthe guttata HOM05D000452 ORTHO05D002419 2.1e-06 55.1 48 50.0
FvH4_7g19330 Fragaria vesca HOM05D000452 ORTHO05D002419 2.1e-06 55.1 35 62.9
FAN01G2270 Fragaria x ananassa HOM05D000452 ORTHO05D002419 2.1e-06 55.1 35 62.9
FAN03G3088 Fragaria x ananassa HOM05D000452 ORTHO05D002419 2.1e-06 55.1 35 62.9
FAN06G3419 Fragaria x ananassa HOM05D000452 ORTHO05D002419 2.1e-06 55.1 35 62.9
FAN10G1181 Fragaria x ananassa HOM05D000452 ORTHO05D002419 2.1e-06 55.1 35 62.9
Gohir.D08G216300 Gossypium hirsutum HOM05D000452 ORTHO05D002419 2.1e-06 55.1 50 48.0
Nn2g10819 Nelumbo nucifera HOM05D000452 ORTHO05D002419 2.1e-06 55.1 50 48.0
RcHm_v2.0_Chr1g0363211 Rosa chinensis HOM05D000452 ORTHO05D002419 2.1e-06 55.1 35 62.9
SGA_v2.0_scaffold116G32276 Striga asiatica HOM05D000452 ORTHO05D002419 2.1e-06 55.1 35 60.0
ClCG08G007570 Citrullus lanatus HOM05D000452 ORTHO05D002419 2.7e-06 54.7 37 62.2
CsaV3_6G036520 Cucumis sativus L. HOM05D000452 ORTHO05D002419 2.7e-06 54.7 37 62.2
Lj5g0011450 Lotus japonicus HOM05D000452 ORTHO05D002419 2.7e-06 54.7 48 50.0
MD01G1107900 Malus domestica HOM05D000452 ORTHO05D002419 2.7e-06 54.7 48 47.9
MD07G1173600 Malus domestica HOM05D000452 ORTHO05D002419 2.7e-06 54.7 48 47.9
PGR142G1506 Punica granatum HOM05D000452 ORTHO05D002419 2.7e-06 54.7 50 48.0
Sed0002497 Sechium edule HOM05D000452 ORTHO05D002419 2.7e-06 54.7 37 62.2
Sed0024027 Sechium edule HOM05D000452 ORTHO05D002419 2.7e-06 54.7 37 62.2
Haze_23810 Corylus avellana HOM05D000452 ORTHO05D002419 3.5e-06 54.3 52 46.2
MELO3C019806.2 Cucumis melo HOM05D000452 ORTHO05D002419 3.5e-06 54.3 37 62.2
Duzib106G1110 Durio zibethinus HOM05D000452 ORTHO05D002419 3.5e-06 54.3 48 47.9
Thecc.10G075600 Theobroma cacao HOM05D000452 ORTHO05D002419 3.5e-06 54.3 48 50.0
Cc01_g10990 Coffea canephora HOM05D000452 ORTHO05D002419 4.6e-06 53.9 35 60.0
Eucgr.B02509 Eucalyptus grandis HOM05D000452 ORTHO05D002419 4.6e-06 53.9 50 50.0
Eucgr.G02842 Eucalyptus grandis HOM05D000452 ORTHO05D002419 4.6e-06 53.9 37 59.5
Gohir.D05G296600 Gossypium hirsutum HOM05D000452 ORTHO05D002419 4.6e-06 53.9 48 47.9
Gorai.009G313600 Gossypium raimondii HOM05D000452 ORTHO05D002419 4.6e-06 53.9 48 47.9
Lalb_Chr22g0350291 Lupinus albus HOM05D000452 ORTHO05D002419 4.6e-06 53.9 50 46.0
Prupe.2G212800 Prunus persica HOM05D000452 ORTHO05D002419 4.6e-06 53.9 35 60.0
Aqoxy2G01715 Aquilegia oxysepala HOM05D000452 ORTHO05D002419 6.0e-06 53.5 48 47.9
Ca_10566_v3 Cicer arietinum L. HOM05D000452 ORTHO05D002419 6.0e-06 53.5 35 60.0
Gohir.1Z049569 Gossypium hirsutum HOM05D000452 ORTHO05D002419 6.0e-06 53.5 50 48.0
Gohir.A05G296700 Gossypium hirsutum HOM05D000452 ORTHO05D002419 6.0e-06 53.5 48 47.9
Gohir.A08G198900 Gossypium hirsutum HOM05D000452 ORTHO05D002419 6.0e-06 53.5 50 48.0
Gohir.D03G135700 Gossypium hirsutum HOM05D000452 ORTHO05D002419 6.0e-06 53.5 50 48.0
HanXRQChr09g0247311 Helianthus annuus HOM05D000452 ORTHO05D002419 6.0e-06 53.5 35 60.0
Lsat_1_v5_gn_1_64060 Lactuca sativa HOM05D000452 ORTHO05D002419 6.0e-06 53.5 50 46.0
Nitab4.5_0000602g0110 Nicotiana tabacum HOM05D000452 ORTHO05D002419 6.0e-06 53.5 37 56.8
TWI63G1462 Tripterygium wilfordii HOM05D000452 ORTHO05D002419 6.0e-06 53.5 50 46.0
Zm00001eb045660 Zea mays HOM05D000452 ORTHO05D002419 6.0e-06 53.5 50 48.0
Aa31sc32G30 Aethionema arabicum HOM05D000452 ORTHO05D002419 7.8e-06 53.1 37 56.8
BcaB02g07723 Brassica carinata HOM05D000452 ORTHO05D002419 7.8e-06 53.1 37 56.8
BcaC08g44696 Brassica carinata HOM05D000452 ORTHO05D002419 7.8e-06 53.1 37 56.8
A07p22240 Brassica napus HOM05D000452 ORTHO05D002419 7.8e-06 53.1 37 56.8
C06p22320 Brassica napus HOM05D000452 ORTHO05D002419 7.8e-06 53.1 37 56.8
BolC6t37419H Brassica oleracea HOM05D000452 ORTHO05D002419 7.8e-06 53.1 37 56.8
BraA07t29903Z Brassica rapa HOM05D000452 ORTHO05D002419 7.8e-06 53.1 37 56.8
Carub.0005s2139 Capsella rubella HOM05D000452 ORTHO05D002419 7.8e-06 53.1 35 60.0
Migut.N02590 Erythranthe guttata HOM05D000452 ORTHO05D002419 7.8e-06 53.1 35 60.0
Thhalv10010151m.g Eutrema salsugineum HOM05D000452 ORTHO05D002419 7.8e-06 53.1 35 60.0
Gorai.003G142800 Gossypium raimondii HOM05D000452 ORTHO05D002419 7.8e-06 53.1 50 48.0
Medtr1g094890 Medicago truncatula HOM05D000452 ORTHO05D002419 7.8e-06 53.1 48 47.9
Sp5g07640 Schrenkiella parvula HOM05D000452 ORTHO05D002419 7.8e-06 53.1 35 60.0
Solyc04g025280.4 Solanum lycopersicum HOM05D000452 ORTHO05D002419 7.8e-06 53.1 44 52.3
Sopen04g011920 Solanum pennellii HOM05D000452 ORTHO05D002419 7.8e-06 53.1 44 52.3


User provided reference genes

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