Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 3.4e-68 261.5 131 100.0
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.9e-50 202.6 157 69.4
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 6.8e-45 184.1 108 84.3
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 6.8e-45 184.1 108 84.3
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 3.4e-44 181.8 108 80.6
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 2.1e-33 146.0 80 86.2
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 6.0e-33 144.4 102 72.5
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 6.7e-24 114.4 108 58.3
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 8.1e-22 107.5 130 50.8
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 8.1e-22 107.5 130 50.0
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 9.0e-21 104.0 130 47.7
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 1.2e-20 103.6 130 46.9
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 1.2e-20 103.6 130 49.2
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.2e-20 103.6 130 49.2
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.5e-20 103.2 130 48.5
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 2.0e-20 102.8 130 46.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 4.5e-20 101.7 101 59.4
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.5e-20 101.7 130 46.9
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 7.6e-20 100.9 130 47.7
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 2.9e-19 99.0 149 46.3
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.1e-18 97.1 129 45.7
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.2e-17 93.6 130 41.5
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.1e-17 92.8 128 43.0
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 3.5e-17 92.0 130 41.5
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.5e-17 92.0 128 41.4
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 7.9e-17 90.9 130 40.0
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.0e-16 90.5 128 41.4
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.0e-16 90.5 130 42.3
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.3e-16 90.1 128 40.6
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.3e-16 90.1 130 42.3
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.3e-16 90.1 135 40.7
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.3e-16 90.1 128 41.4
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.8e-16 89.7 128 40.6
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 1.8e-16 89.7 128 41.4
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 2.3e-16 89.4 128 41.4
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 2.3e-16 89.4 128 41.4
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 2.3e-16 89.4 130 40.0
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 2.3e-16 89.4 130 40.0
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 3.9e-16 88.6 130 41.5
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 5.1e-16 88.2 130 40.8
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 5.1e-16 88.2 128 42.2
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 6.7e-16 87.8 128 40.6
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 8.7e-16 87.4 130 42.3
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 8.7e-16 87.4 128 40.6
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 8.7e-16 87.4 130 40.8
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.1e-15 87.0 130 40.8
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 1.1e-15 87.0 130 40.8
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.5e-15 86.7 128 40.6
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 1.5e-15 86.7 128 39.8
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.5e-15 86.7 130 40.0
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.5e-15 86.7 130 40.0
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.9e-15 86.3 128 40.6
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 1.9e-15 86.3 128 39.8
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 2.5e-15 85.9 128 39.8
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.3e-15 85.5 128 40.6
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 3.3e-15 85.5 128 40.6
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 4.3e-15 85.1 130 39.2
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 4.3e-15 85.1 130 39.2
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 4.3e-15 85.1 128 40.6
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 4.3e-15 85.1 128 40.6
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.7e-15 84.7 128 39.8
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 5.7e-15 84.7 130 39.2
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 7.4e-15 84.3 128 39.8
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 9.6e-15 84.0 130 39.2
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.3e-14 83.6 128 38.3
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.6e-14 83.2 128 39.1
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.1e-14 82.8 128 39.1
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 2.8e-14 82.4 128 38.3
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.8e-14 82.4 128 38.3
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.7e-14 82.0 128 37.5
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 3.7e-14 82.0 128 39.1
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 6.3e-14 81.3 128 39.1
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 6.3e-14 81.3 128 37.5
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 6.3e-14 81.3 128 38.3
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 6.3e-14 81.3 128 36.7
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 6.3e-14 81.3 128 37.5
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.1e-13 80.5 130 36.9
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 1.1e-13 80.5 128 38.3
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.1e-13 80.5 128 36.7
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.4e-13 80.1 128 39.1
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.4e-13 80.1 128 37.5
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.8e-13 79.7 130 38.5
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.4e-13 79.3 128 35.9
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 2.4e-13 79.3 128 35.9
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 3.1e-13 79.0 128 37.5
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 4.1e-13 78.6 127 39.4
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 4.1e-13 78.6 130 36.9
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 5.3e-13 78.2 128 37.5
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 5.3e-13 78.2 128 36.7
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 5.3e-13 78.2 128 36.7
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 6.9e-13 77.8 130 42.3
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 6.9e-13 77.8 128 36.7
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 6.9e-13 77.8 127 37.8
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 9.0e-13 77.4 128 36.7
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 2.6e-12 75.9 128 36.7
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 2.6e-12 75.9 128 36.7
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 1.0e-11 73.9 128 35.2
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 3.8e-11 72.0 128 33.6
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 3.8e-11 72.0 129 37.2
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 1.4e-10 70.1 131 41.2
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 2.7e-09 65.9 129 33.3
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.8e-08 63.2 127 32.3
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.8e-08 63.2 127 32.3
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 6.7e-08 61.2 80 45.0
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 8.7e-08 60.8 75 46.7
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.5e-07 60.1 129 31.8
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.3e-06 57.0 72 45.8
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 3.7e-06 55.5 97 33.0


User provided reference genes

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