Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 2.8e-55 218.4 110 100.0
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 8.6e-41 170.2 99 83.8
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 5.2e-38 161.0 110 76.4
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 2.2e-36 155.6 100 80.0
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 3.2e-35 151.8 102 76.5
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 4.1e-35 151.4 100 78.0
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 3.3e-32 141.7 100 73.0
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 4.9e-28 127.9 87 75.9
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 6.2e-23 110.9 77 74.0
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 8.1e-23 110.5 77 74.0
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.4e-22 109.8 77 72.7
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.8e-22 109.4 77 72.7
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.8e-22 109.4 77 72.7
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 2.4e-22 109.0 76 73.7
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 4.0e-22 108.2 78 69.2
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 5.2e-22 107.8 76 72.4
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 3.4e-21 105.1 78 66.7
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 7.6e-21 104.0 78 66.7
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 9.9e-21 103.6 78 65.4
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.7e-20 102.8 78 64.1
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 2.2e-20 102.4 100 59.0
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 9.2e-19 97.1 78 62.8
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.3e-17 93.2 83 55.4
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 5.1e-17 91.3 82 54.9
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 1.9e-16 89.4 78 55.1
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.9e-16 89.4 78 57.7
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.3e-16 88.6 78 57.7
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 3.3e-16 88.6 77 58.4
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 3.3e-16 88.6 82 54.9
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 3.3e-16 88.6 81 56.8
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 3.3e-16 88.6 78 57.7
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 4.3e-16 88.2 75 61.3
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 4.3e-16 88.2 82 54.9
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 4.3e-16 88.2 82 53.7
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 5.6e-16 87.8 77 57.1
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 7.3e-16 87.4 78 55.1
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 7.3e-16 87.4 78 55.1
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 9.6e-16 87.0 81 55.6
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.2e-15 86.7 78 57.7
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.6e-15 86.3 41 95.1
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.6e-15 86.3 78 57.7
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.6e-15 86.3 78 53.8
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.6e-15 86.3 78 56.4
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.1e-15 85.9 78 53.8
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.8e-15 85.5 78 52.6
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 3.6e-15 85.1 78 56.4
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 4.7e-15 84.7 78 56.4
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 4.7e-15 84.7 78 56.4
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 4.7e-15 84.7 78 53.8
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 6.2e-15 84.3 77 58.4
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 6.2e-15 84.3 78 56.4
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 8.1e-15 84.0 77 54.5
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 8.1e-15 84.0 77 54.5
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 8.1e-15 84.0 89 51.7
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 8.1e-15 84.0 78 56.4
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.1e-14 83.6 83 54.2
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.1e-14 83.6 78 56.4
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.4e-14 83.2 83 50.6
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.8e-14 82.8 81 53.1
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.8e-14 82.8 77 51.9
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 1.8e-14 82.8 81 51.9
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 4.0e-14 81.6 78 52.6
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 4.0e-14 81.6 77 53.2
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 4.0e-14 81.6 80 56.2
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 4.0e-14 81.6 78 53.8
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 4.0e-14 81.6 77 57.1
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 4.0e-14 81.6 77 55.8
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 5.2e-14 81.3 40 95.0
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 5.2e-14 81.3 81 51.9
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 5.2e-14 81.3 75 53.3
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 6.9e-14 80.9 78 52.6
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 6.9e-14 80.9 86 50.0
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 6.9e-14 80.9 77 54.5
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 6.9e-14 80.9 85 50.6
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 9.0e-14 80.5 78 52.6
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 9.0e-14 80.5 77 55.8
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.2e-13 80.1 78 52.6
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.2e-13 80.1 78 55.1
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.5e-13 79.7 39 94.9
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 1.5e-13 79.7 77 55.8
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 2.0e-13 79.3 78 50.0
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.0e-13 79.3 78 53.8
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 2.6e-13 79.0 77 50.6
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 3.4e-13 78.6 77 49.4
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.4e-13 78.6 77 54.5
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 3.4e-13 78.6 78 50.0
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 4.4e-13 78.2 77 53.2
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 4.4e-13 78.2 77 50.6
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 4.4e-13 78.2 76 52.6
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 5.8e-13 77.8 83 49.4
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 5.8e-13 77.8 83 49.4
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 5.8e-13 77.8 77 50.6
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 9.9e-13 77.0 77 50.6
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.7e-12 76.3 83 48.2
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 2.2e-12 75.9 78 53.8
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.9e-12 75.5 77 50.6
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 8.4e-12 73.9 75 50.7
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.4e-11 73.2 79 46.8
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.4e-11 73.2 78 50.0
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 2.4e-11 72.4 39 87.2
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 7.1e-11 70.9 78 50.0
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 2.1e-10 69.3 39 79.5
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.3e-09 66.6 82 45.1
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.7e-09 66.2 67 52.2
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.7e-09 66.2 42 69.0
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.7e-09 66.2 42 69.0
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.7e-09 66.2 42 69.0
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.7e-09 66.2 78 43.6
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 2.3e-09 65.9 69 52.2
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.6e-09 64.3 81 43.2
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.6e-09 64.3 81 43.2
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.6e-09 64.3 81 43.2
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.1e-08 63.5 39 71.8
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.3e-08 61.6 79 43.0
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 4.3e-08 61.6 41 65.9
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 1.3e-07 60.1 66 50.0
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 2.8e-07 58.9 40 67.5
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 2.4e-06 55.8 39 59.0


User provided reference genes

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