Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 3.1e-45 184.9 102 100.0
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 3.1e-45 184.9 102 100.0
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 3.1e-45 184.9 102 100.0
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 5.5e-42 174.1 102 90.2
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 5.5e-42 174.1 102 90.2
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 2.0e-39 165.6 102 85.3
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.1e-34 149.8 94 86.2
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.1e-34 149.8 102 84.3
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 7.2e-34 147.1 80 92.5
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.6e-33 146.0 102 82.4
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 4.7e-33 144.4 102 81.4
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 1.7e-30 136.0 93 79.6
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.2e-30 135.6 102 76.5
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 1.4e-29 132.9 93 83.9
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 4.1e-29 131.3 102 76.5
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 5.9e-28 127.5 102 68.6
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 1.8e-24 115.9 95 74.7
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 2.3e-24 115.5 91 76.9
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 2.3e-24 115.5 91 76.9
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 2.3e-24 115.5 91 76.9
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 5.2e-24 114.4 102 68.6
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 1.2e-23 113.2 102 66.7
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 4.4e-23 111.3 102 66.7
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 4.4e-23 111.3 102 66.7
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 1.3e-22 109.8 92 68.5
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 4.9e-22 107.8 104 63.5
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 1.1e-21 106.7 105 62.9
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 4.5e-20 101.3 102 60.8
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 4.5e-20 101.3 105 61.9
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 5.9e-20 100.9 92 67.4
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 7.8e-20 100.5 93 63.4
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.0e-19 100.1 105 59.0
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 8.6e-19 97.1 106 58.5
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.1e-18 96.7 92 66.3
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 1.1e-18 96.7 104 57.7
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 1.5e-18 96.3 104 55.8
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.5e-18 96.3 102 59.8
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 1.9e-18 95.9 102 59.8
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 3.3e-18 95.1 102 59.8
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 4.3e-18 94.7 101 58.4
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 7.3e-18 94.0 105 56.2
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 2.1e-17 92.4 92 64.1
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 3.6e-17 91.7 106 54.7
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 3.6e-17 91.7 103 56.3
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 4.7e-17 91.3 95 61.1
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 4.7e-17 91.3 108 59.3
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 8.0e-17 90.5 104 55.8
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 8.0e-17 90.5 102 56.9
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 8.0e-17 90.5 105 62.9
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 1.0e-16 90.1 102 56.9
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 1.8e-16 89.4 110 51.8
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 2.3e-16 89.0 105 58.1
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.3e-16 89.0 95 60.0
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.0e-16 88.2 105 57.1
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 5.2e-16 87.8 93 60.2
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 5.2e-16 87.8 105 55.2
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 6.8e-16 87.4 99 54.5
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 1.2e-15 86.7 95 57.9
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 1.5e-15 86.3 95 60.0
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.5e-15 86.3 102 56.9
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 2.6e-15 85.5 103 54.4
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 2.6e-15 85.5 105 54.3
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.4e-15 85.1 105 57.1
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 4.4e-15 84.7 95 56.8
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 5.8e-15 84.3 105 55.2
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 7.5e-15 84.0 107 56.1
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 9.8e-15 83.6 102 54.9
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 9.8e-15 83.6 102 56.9
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.8e-15 83.6 100 56.0
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.3e-14 83.2 103 55.3
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 1.3e-14 83.2 96 58.3
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.3e-14 83.2 105 54.3
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 1.7e-14 82.8 102 52.0
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.2e-14 82.4 102 56.9
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 2.2e-14 82.4 96 54.2
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 2.9e-14 82.0 97 54.6
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.7e-14 81.6 102 56.9
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.7e-14 81.6 95 55.8
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 4.9e-14 81.3 105 54.3
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 6.4e-14 80.9 105 55.2
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 8.3e-14 80.5 103 52.4
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 8.3e-14 80.5 111 51.4
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.1e-13 80.1 105 50.5
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.1e-13 80.1 105 50.5
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 1.1e-13 80.1 96 64.6
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 1.4e-13 79.7 99 53.5
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 1.8e-13 79.3 109 50.5
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.8e-13 79.3 95 54.7
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 3.2e-13 78.6 92 56.5
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 4.1e-13 78.2 94 54.3
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 5.4e-13 77.8 95 53.7
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 9.2e-13 77.0 101 50.5
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 9.2e-13 77.0 102 50.0
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 9.2e-13 77.0 107 52.3
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 9.2e-13 77.0 93 50.5
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 9.2e-13 77.0 96 53.1
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 9.2e-13 77.0 93 53.8
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 1.2e-12 76.6 88 53.4
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.0e-12 75.9 91 57.1
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 2.7e-12 75.5 96 54.2
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 2.7e-12 75.5 97 50.5
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 3.5e-12 75.1 101 50.5
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 3.5e-12 75.1 97 51.5
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 7.8e-12 73.9 100 52.0
BcaNung04987 Brassica carinata HOM05D003477 ORTHO05D004043 1.0e-11 73.6 102 48.0
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 1.0e-11 73.6 101 49.5
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.7e-11 72.8 103 48.5
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 2.3e-11 72.4 96 52.1
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 3.0e-11 72.0 92 54.3
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 8.6e-11 70.5 102 47.1
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 1.9e-10 69.3 94 52.1
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 3.3e-10 68.6 92 51.1
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 4.3e-10 68.2 94 47.9
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 4.3e-10 68.2 80 52.5
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 5.6e-10 67.8 95 51.6
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 7.3e-10 67.4 90 51.1
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 9.5e-10 67.0 95 53.7
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 9.5e-10 67.0 95 53.7
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 9.5e-10 67.0 93 54.8
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 1.6e-09 66.2 89 51.7
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 1.6e-09 66.2 90 51.1
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 2.1e-09 65.9 92 48.9
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 2.8e-09 65.5 110 48.2
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.8e-09 65.5 87 46.0
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 4.7e-09 64.7 90 48.9
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.7e-09 64.7 94 47.9
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 6.2e-09 64.3 96 52.1
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 6.2e-09 64.3 95 50.5
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 8.0e-09 63.9 94 50.0
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 8.0e-09 63.9 95 51.6
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 8.0e-09 63.9 95 51.6
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 8.0e-09 63.9 96 44.8
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.4e-08 63.2 90 48.9
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.8e-08 62.8 97 49.5
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.8e-08 62.8 97 49.5
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 1.8e-08 62.8 95 45.3
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 3.1e-08 62.0 50 62.0
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 3.1e-08 62.0 98 46.9
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 4.0e-08 61.6 104 44.2
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 4.0e-08 61.6 53 60.4
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 5.2e-08 61.2 95 52.6
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 5.2e-08 61.2 97 50.5
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 5.2e-08 61.2 95 45.3
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 8.9e-08 60.5 94 47.9
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 8.9e-08 60.5 95 47.4
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 2.0e-07 59.3 53 56.6
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 2.6e-07 58.9 103 43.7
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 2.6e-07 58.9 97 49.5
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 2.6e-07 58.9 95 46.3
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 2.6e-07 58.9 53 56.6
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 3.4e-07 58.5 93 45.2
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 3.4e-07 58.5 87 47.1
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 3.4e-07 58.5 52 55.8
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 4.4e-07 58.2 97 46.4
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 4.4e-07 58.2 49 61.2
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 9.8e-07 57.0 92 46.7
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 1.3e-06 56.6 92 44.6
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 1.3e-06 56.6 90 45.6
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 1.7e-06 56.2 85 49.4
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 1.7e-06 56.2 93 43.0
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 1.7e-06 56.2 95 47.4
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 2.2e-06 55.8 96 42.7
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 2.2e-06 55.8 103 41.7
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 2.9e-06 55.5 91 44.0
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 2.9e-06 55.5 96 42.7
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 3.7e-06 55.1 100 42.0
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 6.4e-06 54.3 58 55.2
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.3e-06 53.9 82 51.2
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.3e-06 53.9 38 65.8
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 8.3e-06 53.9 93 44.1


User provided reference genes

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