Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 2.6e-59 231.9 120 100.0
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 1.1e-57 226.5 118 99.2
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 1.1e-57 226.5 118 99.2
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 1.9e-57 225.7 121 98.3
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 7.9e-56 220.3 119 97.5
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 1.6e-48 196.1 117 88.9
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 2.1e-48 195.7 117 88.0
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 6.1e-48 194.1 117 87.2
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 1.8e-47 192.6 119 86.6
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 1.3e-45 186.4 130 80.0
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 6.5e-42 174.1 118 80.5
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 1.1e-41 173.3 121 79.3
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 3.3e-38 161.8 99 86.9
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 8.5e-34 147.1 98 79.6
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 1.9e-33 146.0 98 78.6
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.9e-33 146.0 98 78.6
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.9e-33 146.0 98 78.6
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.9e-33 146.0 98 78.6
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.2e-33 145.2 97 79.4
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 5.5e-33 144.4 98 77.6
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 1.6e-32 142.9 103 72.8
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 2.7e-32 142.1 108 69.4
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 3.6e-32 141.7 84 86.9
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 3.6e-32 141.7 108 68.5
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 4.7e-32 141.4 108 69.4
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 4.7e-32 141.4 103 71.8
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 6.1e-32 141.0 106 71.7
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 8.0e-32 140.6 100 76.0
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 1.0e-31 140.2 83 86.7
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 1.0e-31 140.2 106 70.8
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 1.0e-31 140.2 92 80.4
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.0e-31 140.2 106 70.8
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 1.4e-31 139.8 108 70.4
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 1.4e-31 139.8 108 70.4
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 1.8e-31 139.4 111 69.4
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 2.3e-31 139.0 111 65.8
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 2.3e-31 139.0 111 65.8
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 2.3e-31 139.0 111 65.8
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 2.3e-31 139.0 109 66.1
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 3.0e-31 138.7 84 83.3
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 3.0e-31 138.7 101 72.3
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 3.0e-31 138.7 113 69.0
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 3.9e-31 138.3 107 69.2
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 3.9e-31 138.3 107 73.8
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 3.9e-31 138.3 107 68.2
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 5.2e-31 137.9 111 67.6
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 5.2e-31 137.9 83 83.1
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 6.7e-31 137.5 92 79.3
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 6.7e-31 137.5 92 79.3
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 1.1e-30 136.7 108 66.7
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 1.1e-30 136.7 94 74.5
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 1.5e-30 136.3 106 69.8
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 2.0e-30 136.0 107 70.1
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 2.6e-30 135.6 103 70.9
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 3.3e-30 135.2 111 64.9
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 3.3e-30 135.2 110 65.5
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 3.3e-30 135.2 89 82.0
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 3.3e-30 135.2 107 69.2
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 4.4e-30 134.8 100 73.0
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 5.7e-30 134.4 82 84.1
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 5.7e-30 134.4 106 69.8
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 5.7e-30 134.4 108 67.6
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 5.7e-30 134.4 108 67.6
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 5.7e-30 134.4 83 79.5
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 7.4e-30 134.0 107 68.2
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 1.3e-29 133.3 105 67.6
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 1.3e-29 133.3 104 69.2
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 1.3e-29 133.3 102 70.6
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 1.3e-29 133.3 102 70.6
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 1.7e-29 132.9 111 64.0
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 1.7e-29 132.9 106 69.8
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 2.2e-29 132.5 84 79.8
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 2.2e-29 132.5 83 81.9
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 2.8e-29 132.1 101 66.3
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 3.7e-29 131.7 110 65.5
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 3.7e-29 131.7 83 77.1
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 4.8e-29 131.3 107 66.4
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 4.8e-29 131.3 107 66.4
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 4.8e-29 131.3 91 75.8
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 8.2e-29 130.6 96 72.9
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 8.2e-29 130.6 96 74.0
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 1.1e-28 130.2 103 67.0
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 1.1e-28 130.2 92 73.9
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 2.4e-28 129.0 98 71.4
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 3.1e-28 128.6 92 72.8
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 4.1e-28 128.3 99 67.7
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 4.1e-28 128.3 109 65.1
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 5.3e-28 127.9 101 65.3
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 5.3e-28 127.9 82 76.8
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 7.0e-28 127.5 107 64.5
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 9.1e-28 127.1 81 77.8
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 1.2e-27 126.7 103 67.0
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 1.2e-27 126.7 91 72.5
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 1.6e-27 126.3 109 66.1
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 2.6e-27 125.6 82 78.0
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 1.1e-25 120.2 82 79.3
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 1.1e-25 120.2 82 79.3
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 9.4e-25 117.1 83 78.3
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 2.1e-24 115.9 81 77.8
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 4.7e-24 114.8 110 60.9
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 2.6e-22 109.0 145 49.0
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 5.7e-22 107.8 84 67.9
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 1.3e-21 106.7 109 58.7
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 1.7e-21 106.3 80 66.2
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 8.3e-21 104.0 58 91.4
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 4.1e-20 101.7 58 89.7
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 4.1e-20 101.7 81 59.3
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 4.5e-19 98.2 58 84.5
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 1.3e-18 96.7 77 74.0
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 2.9e-18 95.5 81 53.1
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 5.0e-18 94.7 65 69.2
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 2.5e-17 92.4 78 71.8
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 2.1e-16 89.4 58 74.1
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 2.3e-15 85.9 84 59.5
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 2.3e-15 85.9 84 59.5
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 6.8e-15 84.3 79 55.7
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.2e-14 83.6 81 55.6
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 2.0e-14 82.8 83 47.0
BcaB04g18782 Brassica carinata HOM05D006721 ORTHO05D000476 3.4e-14 82.0 67 68.7
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 2.8e-13 79.0 51 70.6
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 2.4e-12 75.9 64 54.7
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 4.1e-12 75.1 45 84.4
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 1.2e-11 73.6 84 46.4
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 1.6e-11 73.2 41 87.8
C08p15110 Brassica napus HOM05D000263 ORTHO05D028311 2.0e-11 72.8 41 87.8
BolC8t49141H Brassica oleracea HOM05D000263 ORTHO05D028311 2.0e-11 72.8 41 87.8
BcaC06g35701 Brassica carinata HOM05D000809 ORTHO05D001196 6.1e-08 61.2 35 85.7
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 1.0e-07 60.5 60 53.3
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 1.8e-07 59.7 46 60.9
A09p05680 Brassica napus HOM05D006721 ORTHO05D000476 3.4e-06 55.5 28 96.4


User provided reference genes

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