Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 1.5e-77 292.7 142 100.0
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 9.9e-74 280.0 140 96.4
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 2.7e-71 271.9 134 100.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.8e-59 232.6 120 95.0
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 2.2e-49 199.1 155 68.4
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 3.8e-49 198.4 151 69.5
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 5.0e-49 198.0 151 68.9
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 1.1e-48 196.8 151 69.5
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.1e-48 196.8 151 69.5
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 4.2e-48 194.9 150 68.7
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.6e-47 193.0 144 69.4
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 3.6e-47 191.8 150 68.0
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.0e-46 190.3 150 66.7
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 3.3e-45 185.3 93 92.5
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 9.7e-45 183.7 150 65.3
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.8e-44 182.2 152 62.5
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 8.2e-44 180.6 151 64.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 6.9e-43 177.6 150 61.3
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.2e-42 176.8 149 62.4
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.5e-42 176.4 149 61.1
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.5e-42 176.4 156 60.3
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.5e-42 176.4 149 62.4
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.0e-42 176.0 150 62.7
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 3.4e-42 175.3 149 61.7
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 3.4e-42 175.3 149 61.7
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.4e-42 175.3 150 62.0
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 3.4e-42 175.3 149 61.1
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 4.5e-42 174.9 150 60.0
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 4.5e-42 174.9 149 61.1
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 5.9e-42 174.5 149 61.7
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 7.7e-42 174.1 169 56.2
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 7.7e-42 174.1 151 60.3
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 7.7e-42 174.1 112 73.2
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 7.7e-42 174.1 149 60.4
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.0e-41 173.7 151 61.6
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.0e-41 173.7 151 60.3
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.3e-41 173.3 150 60.7
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 2.9e-41 172.2 149 59.7
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.8e-41 171.8 156 58.3
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 8.5e-41 170.6 150 61.3
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.1e-40 170.2 151 58.3
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.4e-40 169.9 153 60.1
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.4e-40 169.9 153 60.1
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 1.4e-40 169.9 153 60.1
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.4e-40 169.9 151 59.6
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 4.2e-40 168.3 149 58.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 5.5e-40 167.9 150 59.3
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 5.5e-40 167.9 148 58.8
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 7.2e-40 167.5 150 58.7
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.2e-39 166.8 150 60.0
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.2e-39 166.8 149 57.7
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.2e-39 166.8 150 58.0
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 1.2e-39 166.8 149 59.1
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.6e-39 166.4 149 59.1
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.6e-39 166.4 152 58.6
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.6e-39 165.2 149 57.7
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 3.6e-39 165.2 150 58.0
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.7e-39 164.9 150 58.7
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 6.1e-39 164.5 149 59.7
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.1e-39 164.5 142 61.3
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 6.1e-39 164.5 150 56.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 6.1e-39 164.5 151 57.0
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 7.9e-39 164.1 150 55.3
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 1.0e-38 163.7 149 58.4
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.0e-38 163.7 151 57.0
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.0e-38 163.7 150 56.0
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.0e-38 163.7 151 55.6
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.0e-38 163.7 148 58.8
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.4e-38 163.3 151 57.0
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.4e-38 163.3 157 56.1
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.4e-38 163.3 152 57.2
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.4e-38 163.3 150 55.3
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.4e-38 163.3 152 57.2
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.8e-38 162.9 150 58.0
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 2.3e-38 162.5 148 58.1
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.3e-38 162.5 145 57.9
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 2.3e-38 162.5 142 57.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.3e-38 162.5 150 56.0
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 3.9e-38 161.8 145 57.9
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 6.7e-38 161.0 152 55.3
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 6.7e-38 161.0 150 55.3
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.1e-37 160.2 156 54.5
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.1e-37 160.2 150 54.7
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.5e-37 159.8 151 57.6
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.5e-37 159.8 151 57.6
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 3.3e-37 158.7 151 54.3
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 3.3e-37 158.7 145 56.6
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 4.4e-37 158.3 151 55.0
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 4.4e-37 158.3 151 58.3
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 7.4e-37 157.5 156 51.9
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 9.7e-37 157.1 150 55.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 9.7e-37 157.1 150 55.3
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 9.7e-37 157.1 150 55.3
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.3e-36 156.8 149 55.7
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.3e-36 156.8 150 53.3
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 2.2e-36 156.0 151 57.0
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.2e-36 156.0 151 55.0
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 4.8e-36 154.8 150 58.0
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 4.8e-36 154.8 150 54.7
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.3e-36 154.5 151 55.0
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 8.2e-36 154.1 93 74.2
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.4e-35 153.3 161 49.7
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.4e-35 153.3 150 55.3
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.4e-35 152.5 148 54.7
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.4e-35 152.5 150 52.7
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 3.1e-35 152.1 150 52.7
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 5.3e-35 151.4 157 53.5
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 5.3e-35 151.4 150 52.7
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 7.0e-35 151.0 151 53.6
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 7.0e-35 151.0 151 53.6
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.2e-34 150.2 151 53.0
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 3.5e-34 148.7 150 52.0
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 3.5e-34 148.7 140 55.7
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 7.7e-34 147.5 157 52.2
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.2e-33 146.0 138 58.0
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 5.0e-33 144.8 161 50.3
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 5.0e-33 144.8 161 49.1
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.9e-32 142.9 106 65.1
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.2e-32 142.1 190 45.3
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.2e-32 142.1 190 45.3
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 2.1e-31 139.4 143 49.7
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 2.1e-31 139.4 148 50.7
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 2.3e-30 136.0 153 47.1
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.5e-29 133.3 149 49.0
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.6e-29 132.5 87 69.0
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.7e-28 129.8 83 68.7
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.0e-26 122.9 166 47.0
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 6.1e-23 111.3 83 59.0
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.4e-19 98.2 63 71.4
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.3e-14 82.8 57 63.2
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.7e-12 75.5 66 56.1
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 3.7e-12 75.5 157 34.4
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.9e-12 75.1 69 53.6
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 3.5e-10 68.9 40 77.5
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.7e-09 66.6 88 44.3
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 5.0e-09 65.1 75 49.3
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.3e-08 62.0 126 29.4
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 4.7e-07 58.5 42 64.3
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.0e-06 57.4 35 68.6
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.8e-06 56.6 42 64.3
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 1.8e-06 56.6 42 64.3
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 1.8e-06 56.6 42 64.3
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.0e-06 55.5 98 39.8


User provided reference genes

Program Settings