Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 3.0e-144 515.4 300 100.0
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 3.0e-144 515.4 300 100.0
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 1.5e-92 343.6 209 100.0
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 2.1e-81 306.6 210 80.0
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 3.6e-81 305.8 210 80.0
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 5.5e-74 282.0 210 85.2
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 1.4e-69 267.3 220 71.4
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 6.0e-44 182.2 221 52.9
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 2.4e-37 160.2 212 48.1
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 5.4e-37 159.1 221 47.5
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 5.4e-37 159.1 223 47.1
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.5e-36 156.4 222 45.9
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 7.8e-36 155.2 227 45.8
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.1e-34 151.4 210 47.1
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.3e-34 149.8 237 41.8
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 1.2e-33 147.9 230 43.5
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 4.0e-32 142.9 219 43.4
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 6.8e-32 142.1 233 41.6
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 7.6e-31 138.7 218 45.4
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 5.8e-23 112.5 220 43.6
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 8.4e-22 108.6 241 36.9
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.4e-21 107.8 247 36.4
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 9.3e-21 105.1 253 33.6
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 2.1e-20 104.0 239 33.9
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 3.5e-20 103.2 212 38.2
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 6.0e-20 102.4 236 36.0
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 7.8e-20 102.1 212 37.7
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.0e-19 101.7 218 35.8
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.3e-19 101.3 207 38.2
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 1.9e-18 97.4 204 38.2
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 3.3e-18 96.7 255 34.9
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 5.6e-18 95.9 218 37.2
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 9.6e-18 95.1 273 36.6
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.3e-17 94.7 232 34.1
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.8e-17 93.6 238 33.2
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.8e-17 93.6 231 33.3
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 8.1e-17 92.0 238 32.4
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 8.1e-17 92.0 255 30.2
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 3.1e-16 90.1 226 35.0
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 3.1e-16 90.1 255 30.6
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 4.0e-16 89.7 219 37.0
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.3e-16 89.4 249 30.5
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 6.9e-16 89.0 243 30.5
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 9.0e-16 88.6 246 32.5
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.5e-15 87.8 229 32.8
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.0e-15 87.4 240 33.8
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.0e-15 87.4 231 32.9
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 7.6e-15 85.5 225 32.9
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 9.9e-15 85.1 232 31.9
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.2e-14 84.0 255 31.0
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 2.9e-14 83.6 212 33.5
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 2.9e-14 83.6 252 33.7
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 2.9e-14 83.6 230 34.3
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 3.8e-14 83.2 248 31.0
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.8e-14 83.2 238 33.6
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 4.9e-14 82.8 242 30.6
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 4.9e-14 82.8 251 35.5
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 4.9e-14 82.8 245 28.2
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 4.9e-14 82.8 249 28.9
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 4.9e-14 82.8 213 33.8
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 8.4e-14 82.0 247 31.6
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 8.4e-14 82.0 246 31.7
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.9e-13 80.9 218 33.9
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 1.9e-13 80.9 257 30.4
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.9e-13 80.9 248 30.6
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 2.4e-13 80.5 240 33.3
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 2.4e-13 80.5 208 35.6
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 5.4e-13 79.3 229 32.3
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 5.4e-13 79.3 252 31.3
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 5.4e-13 79.3 243 31.3
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 9.3e-13 78.6 244 30.3
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 1.6e-12 77.8 240 29.6
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 2.7e-12 77.0 258 30.2
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 3.5e-12 76.6 239 31.0
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 3.5e-12 76.6 210 31.4
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 4.6e-12 76.3 245 29.0
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 4.6e-12 76.3 227 30.8
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 6.0e-12 75.9 243 28.4
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 6.0e-12 75.9 235 29.8
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 7.9e-12 75.5 237 28.7
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 7.9e-12 75.5 246 29.7
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.0e-11 75.1 242 28.9
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.3e-11 74.7 244 30.3
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 1.8e-11 74.3 242 31.4
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.3e-11 73.9 264 31.8
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 3.9e-11 73.2 212 31.6
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 3.9e-11 73.2 263 32.7
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 3.9e-11 73.2 251 27.9
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 5.1e-11 72.8 255 29.4
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 8.7e-11 72.0 230 28.7
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 8.7e-11 72.0 240 29.6
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.1e-10 71.6 216 31.9
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.1e-10 71.6 264 28.8
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.9e-10 70.9 235 28.5
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 4.3e-10 69.7 223 28.7
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.3e-10 69.7 239 27.2
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 7.4e-10 68.9 192 30.7
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 7.4e-10 68.9 217 37.3
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 1.3e-09 68.2 227 27.8
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.6e-09 67.8 258 28.3
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 2.1e-09 67.4 253 35.6
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 3.6e-09 66.6 243 28.4
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 1.1e-08 65.1 228 28.9
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 2.4e-08 63.9 237 26.6
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.3e-08 62.8 244 26.2
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 9.0e-08 62.0 238 29.8
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 2.0e-07 60.8 238 27.7
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 2.6e-07 60.5 212 33.0
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 7.6e-07 58.9 249 36.1
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 7.6e-07 58.9 247 26.3
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 9.9e-07 58.5 245 29.4
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.7e-06 57.8 246 24.4
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.2e-06 57.4 231 29.4
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.9e-06 57.0 194 29.9
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 3.8e-06 56.6 43 69.8


User provided reference genes

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