Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 4.8e-49 197.6 106 100.0
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 9.5e-45 183.3 106 94.3
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 5.2e-43 177.6 106 92.5
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 4.9e-41 171.0 106 87.7
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 1.8e-40 169.1 107 86.9
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 1.6e-36 156.0 106 79.2
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 1.5e-34 149.4 112 75.0
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 1.4e-32 142.9 106 69.8
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 2.3e-30 135.6 105 69.5
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 3.9e-30 134.8 89 78.7
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 5.0e-30 134.4 92 75.0
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.1e-29 133.3 103 67.0
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 5.6e-29 131.0 103 67.0
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 6.2e-28 127.5 74 94.6
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 8.0e-28 127.1 74 94.6
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 8.0e-28 127.1 74 94.6
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.4e-27 126.3 103 66.0
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 5.8e-26 120.9 92 69.6
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 2.9e-25 118.6 92 66.3
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 2.9e-25 118.6 92 66.3
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 2.9e-25 118.6 103 63.1
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 1.9e-24 115.9 92 65.2
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 2.4e-24 115.5 74 83.8
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 4.1e-24 114.8 74 83.8
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 7.0e-24 114.0 76 78.9
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 6.0e-23 110.9 105 66.7
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 3.3e-21 105.1 92 60.9
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 9.5e-21 103.6 103 49.5
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 2.8e-20 102.1 103 49.5
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.8e-20 102.1 100 53.0
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 1.4e-19 99.8 105 56.2
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 1.4e-19 99.8 79 67.1
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.2e-17 92.4 95 48.4
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 4.9e-17 91.3 95 49.5
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 6.0e-15 84.3 55 81.8
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 1.3e-14 83.2 100 45.0
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.6e-12 76.3 100 40.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 2.1e-12 75.9 100 38.0
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 2.1e-12 75.9 101 42.6
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 2.8e-12 75.5 100 42.0
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 8.1e-12 73.9 101 39.6
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 1.4e-11 73.2 104 37.5
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 4.0e-11 71.6 103 37.9
C09p21940 Brassica napus HOM05D004264 ORTHO05D004680 4.0e-11 71.6 49 83.7
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 5.2e-11 71.2 97 40.2
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 1.2e-10 70.1 104 37.5
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 1.2e-10 70.1 100 36.0
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 2.0e-10 69.3 100 39.0
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 4.4e-10 68.2 102 36.3
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 2.9e-09 65.5 109 34.9
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 3.8e-09 65.1 100 35.0
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 4.9e-09 64.7 102 33.3
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 6.4e-09 64.3 103 37.9
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 6.4e-09 64.3 101 36.6
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 8.4e-09 63.9 108 37.0
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 8.4e-09 63.9 108 36.1
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.4e-08 63.2 101 35.6
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.9e-08 62.8 100 34.0
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 3.2e-08 62.0 108 36.1
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 4.1e-08 61.6 101 35.6
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 5.4e-08 61.2 100 35.0
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 5.4e-08 61.2 100 35.0
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.1e-08 60.8 101 34.7
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 9.2e-08 60.5 100 33.0
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.2e-07 60.1 101 37.6
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 1.2e-07 60.1 100 34.0
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.6e-07 59.7 101 32.7
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 2.7e-07 58.9 96 36.5
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.7e-07 58.9 101 34.7
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.5e-07 58.5 97 37.1
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 3.5e-07 58.5 99 34.3
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 3.5e-07 58.5 99 33.3
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 3.5e-07 58.5 100 32.0
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.6e-07 58.2 100 34.0
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.6e-07 58.2 97 35.1
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 4.6e-07 58.2 100 32.0
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 4.6e-07 58.2 100 35.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.0e-07 57.8 102 34.3
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 6.0e-07 57.8 98 32.7
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 7.8e-07 57.4 101 31.7
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.0e-06 57.0 101 35.6
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.0e-06 57.0 100 31.0
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.3e-06 56.6 105 34.3
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.3e-06 56.6 97 37.1
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.3e-06 56.6 96 33.3
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.7e-06 56.2 101 33.7
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.3e-06 55.8 101 29.7
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.3e-06 55.8 102 33.3
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.3e-06 55.8 102 33.3
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.3e-06 55.8 102 33.3
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 3.0e-06 55.5 101 31.7
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 3.9e-06 55.1 106 32.1
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 3.9e-06 55.1 100 31.0
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.1e-06 54.7 96 34.4
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 6.6e-06 54.3 99 30.3


User provided reference genes

Program Settings