Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1137.9 593 100.0
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 0.0e+00 1137.9 593 100.0
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 0.0e+00 1137.9 593 100.0
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 0.0e+00 1099.0 597 96.6
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1083.6 599 95.3
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1080.1 593 94.1
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 0.0e+00 1080.1 593 94.1
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1075.8 601 94.2
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 3.1e-310 1067.8 602 92.7
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 7.8e-306 1053.1 598 92.3
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.3e-305 1051.6 602 92.9
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 5.6e-304 1047.0 598 92.5
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 6.2e-303 1043.5 598 91.5
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 2.4e-302 1041.6 593 91.6
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 8.9e-302 1039.6 593 91.1
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 6.0e-298 1026.9 604 89.4
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.1e-294 1016.1 606 86.5
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 6.4e-292 1006.9 544 96.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.9e-289 997.7 600 85.8
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 4.0e-286 987.6 608 84.9
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.3e-284 982.6 543 91.0
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 4.5e-269 931.0 607 78.9
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 2.9e-260 901.7 597 79.1
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.2e-258 896.3 599 78.1
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 2.7e-258 895.2 596 78.7
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 4.6e-258 894.4 596 77.5
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.0e-257 893.3 598 75.8
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.4e-257 892.9 598 78.1
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.8e-257 892.5 599 76.8
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.8e-257 892.5 594 76.6
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 3.0e-257 891.7 595 77.8
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 3.9e-257 891.3 596 77.5
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 5.1e-257 891.0 597 76.4
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 5.1e-257 891.0 599 77.1
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.3e-255 886.3 588 78.9
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.3e-255 886.3 597 77.4
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.2e-255 885.6 601 75.4
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.4e-254 882.9 595 76.1
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.8e-254 882.5 595 76.5
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.8e-254 882.5 601 75.5
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.8e-254 882.5 597 76.4
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 4.1e-254 881.3 596 77.3
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-253 879.8 601 75.4
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.5e-253 879.4 595 77.1
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.0e-253 879.0 598 76.1
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 3.4e-253 878.2 595 76.8
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.0e-252 876.7 601 75.5
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.2e-252 875.5 603 75.1
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 5.0e-252 874.4 599 77.0
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 6.5e-252 874.0 611 74.0
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 5.5e-251 870.9 595 78.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.7e-250 868.6 597 74.4
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 3.6e-250 868.2 598 75.3
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.3e-249 865.5 597 75.9
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 5.2e-249 864.4 595 75.8
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 6.7e-249 864.0 596 74.3
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 3.3e-248 861.7 608 73.7
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.4e-248 861.3 603 74.1
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 5.7e-248 860.9 609 74.2
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 9.7e-248 860.1 608 71.2
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 9.7e-248 860.1 601 73.9
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 9.7e-248 860.1 601 74.0
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.3e-247 859.8 599 73.8
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.2e-247 859.0 608 71.2
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.2e-247 859.0 601 73.7
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 4.8e-247 857.8 599 75.5
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 9.1e-246 853.6 597 74.0
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.6e-245 852.8 590 73.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 5.9e-245 850.9 597 74.2
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.3e-244 849.7 594 74.9
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.3e-244 849.7 594 74.9
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.5e-243 846.3 596 74.7
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.9e-243 845.9 594 73.7
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.5e-243 845.5 592 73.3
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.2e-242 843.2 594 73.4
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.2e-242 843.2 594 73.1
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.1e-242 842.4 598 72.9
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.0e-241 838.6 595 72.9
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 6.7e-241 837.4 594 72.2
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.2e-240 836.6 594 72.7
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.2e-240 836.6 594 72.9
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.5e-240 836.3 596 74.2
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 3.1e-238 828.6 597 73.2
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 4.1e-238 828.2 595 72.3
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 5.3e-238 827.8 607 73.0
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.2e-237 826.6 596 73.2
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.7e-237 825.5 599 73.1
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.7e-237 825.5 592 73.5
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.0e-236 823.5 593 71.8
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 2.2e-236 822.4 592 72.8
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 3.8e-236 821.6 594 73.2
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 5.0e-236 821.2 586 72.5
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.1e-235 820.1 593 72.3
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 7.2e-235 817.4 616 69.6
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 9.4e-235 817.0 610 69.3
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.5e-232 809.7 597 71.2
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 3.1e-230 802.0 593 70.7
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 6.5e-228 794.3 605 68.9
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 8.6e-228 793.9 592 70.8
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 5.5e-227 791.2 603 68.7
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 9.5e-227 790.4 593 68.6
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.6e-224 782.3 599 70.3
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 5.7e-224 781.2 597 68.5
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 9.8e-224 780.4 601 69.1
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 4.9e-223 778.1 597 68.7
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 3.5e-221 771.9 607 68.7
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 7.8e-221 770.8 494 85.8
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 6.6e-220 767.7 593 67.6
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-219 766.9 601 68.7
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.0e-217 760.4 645 64.3
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 5.2e-217 758.1 611 67.9
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.7e-215 753.1 611 66.1
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.9e-215 752.3 603 66.7
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 4.9e-207 724.9 620 61.5
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 6.4e-207 724.5 522 72.4
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 7.0e-206 721.1 598 64.5
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.7e-204 716.5 595 65.7
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 3.0e-204 715.7 596 65.4
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.0e-200 703.0 593 64.4
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.7e-196 689.9 566 64.5
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.6e-196 687.6 474 74.7
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.9e-173 611.3 599 57.9
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.5e-155 553.9 517 60.7
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.6e-154 550.4 602 50.5
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.1e-153 547.7 605 52.6
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 6.1e-141 505.4 598 50.5
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 6.1e-133 478.8 617 44.6
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 8.0e-133 478.4 602 50.3
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 3.2e-126 456.4 588 46.4
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 5.1e-87 326.2 209 75.6
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.8e-84 317.8 243 64.6
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.9e-82 310.5 322 52.8
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 8.9e-76 288.9 623 33.7
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 7.3e-62 242.7 581 31.3
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.6e-61 240.4 265 53.2
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 3.6e-61 240.4 233 61.4
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 4.9e-50 203.4 147 69.4
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.8e-47 194.9 151 68.9
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 5.5e-33 146.7 626 25.7
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 1.6e-32 145.2 79 91.1
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 1.4e-31 142.1 79 89.9
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.1e-30 139.0 98 65.3
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.5e-30 137.9 201 42.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.6e-19 101.3 77 61.0
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.4e-15 89.0 114 43.0
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.0e-14 85.1 209 40.2
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 8.2e-13 79.7 90 46.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.2e-10 71.6 59 62.7


User provided reference genes

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